GSE9452

Definition of an ulcerative colitis preinflammatory state

Whole-study status Not suitable

Dataset does not meet the current suitability threshold.

Whole-study downloads — these do not apply your sample requirements.

Selected cohort requirements

Samples meeting selected requirements: 0 cases / 0 controls

View matching samples

8 case / 18 control samples elsewhere in the study have incomplete or conflicting evidence; they are not included above

Patient pairs verified in indexed sample metadata: 0

A case/control comparison meeting these requirements is not confirmed.

Counts describe samples, not independent patients. Pair verification uses explicit subject identifiers in indexed sample metadata. Zero verified pairs does not establish that the study is unpaired; reported matched-normal design alone is insufficient.

Source: GEO
Assay: microarray
Organism: Homo sapiens
Whole-study samples: 26 samples
Specimen: Biopsy
Reported/interpreted study design: Disease/model vs control Design classification does not establish patient pairs.

Comparison type: Tumor vs normal
Contributors: Olsen J, Nielsen OH, Csillag C, Seidelin J
Contact name: Jorgen Olsen
Submission date: 2007-10-29
Last update: 2019-03-25
Organization: University of Copenhagen
Department: Department of Cellular and Molecular Medicine
Public date: 2007-10-31
Experiment types: Expression profiling by array
Platforms: GPL570 [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array
Series type: Series
SubSeries: Not available
BioProject: PRJNA103213

Summary

The samples are a part of a study aiming at diagnosing ulcerative colitis from genome-wide gene expression analysis of the colonic mucosa. Colonic mucosal samples were collected as endoscopic pinch biopsies from ulcerative colitis patients and from control subjects. Samples with and without macroscopic signs of inflammation were collected from the patients. Keywords: Disease state analysis

Overall design

The series contain eight UC samples with macroscopic signs of inflammation, 13 UC smaples without macroscopic signs of inflammation, five control subjects.

Source Evidence

4 sources

Source	Contribution	Status
GEO	Original dataset metadata, sample metadata, source links, and GEO data availability flags. Sample records 26 GSM samples	Primary source
recount3	Planned trusted source for processed count availability.	No match found
Expression Atlas	Planned source for curated expression experiment links.	No match found
PubMed	Primary GEO citations and related PubMed articles that mention this dataset. 5 linked publications 5 DOIs Primary publication Diagnosis of ulcerative colitis before onset of inflammation by multivariate modeling of genome-wide gene expression data. Inflammatory bowel diseases, 2009 PubMed DOI Related publications Identification and analysis of key genes associated with ulcerative colitis based on DNA microarray data. Medicine, 2018 PubMed DOI Artemisinin Alleviates Intestinal Inflammation and Metabolic Disturbance in Ulcerative Colitis Rats Induced by DSS. Evidence-based complementary and alternative medicine : eCAM, 2022 PubMed DOI Bioinformatics Analysis of Key Candidate Genes and Pathways in Ulcerative Colitis. Biological & pharmaceutical bulletin, 2020 PubMed DOI Evaluation of the Mechanism of Sinomenii Caulis in Treating Ulcerative Colitis based on Network Pharmacology and Molecular Docking. Current computer-aided drug design, 2024 PubMed DOI	Available

Metadata Quality Components

Persisted metadata quality

100 pts

Clarity: 100%
Weight: 100 pts

Sample source clarity: All samples have source metadata and clear GSE/GSM accessions. Group clarity: Rule-based grouping found both case and control samples. Disease clarity: Disease or condition metadata normalized. Tissue clarity: Anatomical source metadata normalized. Treatment clarity: No unclear treatment split detected in the sample metadata. Replicate clarity: No pooled sample or technical replicate flags detected. Data availability clarity: Dataset-level processed or raw data availability is explicit.

Analysis Readiness

Ready after review

97% DE readiness

Contrast completeness

25/25 pts

Both case and control groups are present in the proposed grouping.

Minimum group size

20/20 pts

Each contrast group has at least 2 samples.

Processed data availability

20/20 pts

Processed data is marked available in the GEO index.

Sample decision clarity

15/15 pts

All samples are assigned to a case or control group.

Blocking warnings

7/10 pts

Warnings are present, but none are critical blockers.

Metadata normalization

10/10 pts

Metadata quality is high enough to support downstream handoff.

Blockers

No readiness blockers detected.

Next Steps

Verify the proposed sample assignments and case-versus-control comparison against the GEO metadata before using them in DESeq2 or another differential-expression tool.
Confirm processed count files and sample identifiers match the exported metadata.

Analysis Preparation Checklist

5/6 ready

Group labels reviewed

Needs review

Siftome proposed case and control labels, but no reviewer confirmation is stored yet.

Open the sample grouping CSV and confirm group labels before analysis.

Minimum sample count met

Ready

Both groups meet the minimum of 2 samples.

Confirm whether the cohort is large enough for the intended statistical analysis.

Processed counts available

Ready

Processed data availability is marked true in the GEO index.

Verify that downloaded processed files contain usable count or expression identifiers.

Ambiguous samples handled

Ready

No review-needed or unassigned samples are present in the proposed grouping.

Review the grouping table for biologically meaningful differences that the automated checks may not detect.

Exclusion decisions recorded

Ready

No hard-excluded samples were detected by the current rules.

Record any manual exclusions in the downstream analysis notes.

Source traceability preserved

Ready

The dataset and sample accessions can be traced back to GEO.

Keep GEO accessions with exported metadata.

Bioinformatician Review

Bioinformatician review required

Ask a bioinformatician to review grouping, count availability, exclusions, and design before DE.

Assay context may require expert handling before DESeq2-style analysis.

Why This Is Ranked Here

Tumor vs normal

Not suitable Dataset does not meet the current suitability threshold.

Applied Review Decisions

No active review decisions affect this ranking.

Derived Classifications

Assay differs from search intent Microarray Search intent expects bulk RNA-seq. Assay came from Normalization rules.
Disease context Ulcerative colitis Disease context came from Normalization rules.
Likely case group Inflamed tissue 8 samples
Likely control group Non-inflamed tissue 18 samples

Intent Interpretation

Downgrade or exclusion reason Downgraded assay: microarray cohorts are separated from the RNA-seq intent. Derived from current-intent ranking reasons.

Ranking Facts

Supporting evidence

Comparison: Disease/model vs control. Specimen: Biopsy. Comparison suitability: 0%.
Interpreted disease metadata: Ulcerative colitis.
Processed data is available for downstream review.
External evidence: PubMed links 5 publications; 5 DOIs available: PMID 19177426, PMID 29794741, PMID 33132321, PMID 35497913, PMID 37078344.
Publication context: Diagnosis of ulcerative colitis before onset of inflammation by multivariate modeling of genome-wide gene expression data.. Inflammatory bowel diseases, 2009. PMID 19177426. DOI 10.1002/ibd.20879.
Publication context: Identification and analysis of key genes associated with ulcerative colitis based on DNA microarray data.. Medicine, 2018. PMID 29794741. DOI 10.1097/MD.0000000000010658.
Publication context: Bioinformatics Analysis of Key Candidate Genes and Pathways in Ulcerative Colitis.. Biological & pharmaceutical bulletin, 2020. PMID 33132321. DOI 10.1248/bpb.b20-00488.
Publication context: 2 additional linked PubMed publications are available.

Cautions

Downgraded assay: microarray cohorts are separated from the RNA-seq intent.
Disease/control design without a tumor/normal comparison is outside tumor/normal triage.
Overall score capped because comparison suitability is weak for the selected search intent.
Comparison suitability score is below the Phase 1 recommended threshold.

Dataset Warnings

Microarray expression context was detected; compare separately from RNA-seq cohorts.
Microarray datasets are downgraded in the patient-tissue tumor-normal intent unless secondary assays are explicitly enabled.

Normalized Fields

155 fields

Field Value Source Derived by Confidence Evidence Reason

anatomical_source colon GSM239617 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colonic source_name: Colonic mucosal endoscopic pinch biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM239618 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colonic source_name: Colonic mucosal endoscopic pinch biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM239714 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colonic source_name: Colonic mucosal endoscopic pinch biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM239716 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colonic source_name: Colonic mucosal endoscopic pinch biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM239717 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colonic source_name: Colonic mucosal endoscopic pinch biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM239718 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colonic source_name: Colonic mucosal endoscopic pinch biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM239719 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colonic source_name: Colonic mucosal endoscopic pinch biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM239720 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colonic source_name: Colonic mucosal endoscopic pinch biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM239723 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colonic source_name: Colonic mucosal endoscopic pinch biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM239725 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colonic source_name: Colonic mucosal endoscopic pinch biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM239726 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colonic source_name: Colonic mucosal endoscopic pinch biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM239727 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colonic source_name: Colonic mucosal endoscopic pinch biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM239729 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colonic source_name: Colonic mucosal endoscopic pinch biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM239730 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colonic source_name: Colonic mucosal endoscopic pinch biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM239731 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colonic source_name: Colonic mucosal endoscopic pinch biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM239732 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colonic source_name: Colonic mucosal endoscopic pinch biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM240022 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colonic source_name: Colonic mucosal endoscopic pinch biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM240023 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colonic source_name: Colonic mucosal endoscopic pinch biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM240024 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colonic source_name: Colonic mucosal endoscopic pinch biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM240025 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colonic source_name: Colonic mucosal endoscopic pinch biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM240026 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colonic source_name: Colonic mucosal endoscopic pinch biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM240027 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colonic source_name: Colonic mucosal endoscopic pinch biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM240028 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colonic source_name: Colonic mucosal endoscopic pinch biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM240029 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colonic source_name: Colonic mucosal endoscopic pinch biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM240030 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colonic source_name: Colonic mucosal endoscopic pinch biopsy sample-anatomical-source-v1 sample-local anatomical source

anatomical_source colon GSM240031 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence colonic source_name: Colonic mucosal endoscopic pinch biopsy sample-anatomical-source-v1 sample-local anatomical source

assay_type microarray GSE9452 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence microarray dataset_accession: GSE9452 dataset_title: Definition of an ulcerative colitis preinflammatory state organism: Homo sapiens assay_type: microarray processed_data_available: true ... keyword match keyword match: microarray

collection_method biopsy GSM239617 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Colonic_mucosa_inflammation_26 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM239618 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colonic_mucosa_inflammation_30 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM239714 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colonic_mucosa_inflamation_76 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM239716 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colonic_mucosa_inflamation_93 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM239717 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colonic_mucosa_inflamation_94 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM239718 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colonic_mucosa_inflamation_95 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM239719 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colonic_mucosa_inflamation_119 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM239720 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colonic_mucosa_inflamation_125 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM239723 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colonoc_mucosa_non_inflamed_30 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM239725 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colonic_mucosa_non_inflamed_75 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM239726 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colonic_mucosa_non_inflamed_93 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM239727 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colonic_mucosa_non_inflamed_94 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM239729 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colonic_mucosa_non_inflamed_95 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM239730 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colonic_mucosa_non_inflamed_122 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM239731 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colonic_mucosa_non_inflamed_123 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM239732 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colonic_mucosa_non_inflamed_125 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM240022 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colonic_mucosa_non_inflamed_76 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM240023 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colonic_mucosa_non_inflamed_721 Colonic mucosal endoscopic pinch biopsy Control subject, biopsy taken from the colon, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM240024 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colonic_mucosa_non_inflamed_722 Colonic mucosal endoscopic pinch biopsy Control subject, biopsy taken from the colon, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM240025 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colonic_mucosa_non_inflamed_728 Colonic mucosal endoscopic pinch biopsy Control subject, biopsy taken from the sigmoideum, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM240026 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colonic_mucosa_non_inflamed_741 Colonic mucosal endoscopic pinch biopsy Control subject, biopsy taken from the colon, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM240027 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colonic_mucosa_non_inflamed_743 Colonic mucosal endoscopic pinch biopsy Control subject, biopsy taken from the sigmoideum, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM240028 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colonic_mucosa_non_inflamed_744 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the colon, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM240029 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colonic_mucosa_non_inflamed_758 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the sigmoideum, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM240030 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colonic_mucosa_non_inflamed_877 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the sigmoideum, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary collection method match: biopsy

collection_method biopsy GSM240031 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colonic_mucosa_non_inflamed_881 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the sigmoideum, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary collection method match: biopsy

disease ulcerative colitis GSE9452 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis dataset_accession: GSE9452 dataset_title: Definition of an ulcerative colitis preinflammatory state organism: Homo sapiens assay_type: microarray processed_data_available: true ... controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM239617 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis Colonic_mucosa_inflammation_26 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM239618 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis colonic_mucosa_inflammation_30 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM239714 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis colonic_mucosa_inflamation_76 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM239716 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis colonic_mucosa_inflamation_93 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM239717 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis colonic_mucosa_inflamation_94 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM239718 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis colonic_mucosa_inflamation_95 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM239719 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis colonic_mucosa_inflamation_119 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM239720 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis colonic_mucosa_inflamation_125 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM239723 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis colonoc_mucosa_non_inflamed_30 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM239725 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis colonic_mucosa_non_inflamed_75 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM239726 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis colonic_mucosa_non_inflamed_93 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM239727 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis colonic_mucosa_non_inflamed_94 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM239729 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis colonic_mucosa_non_inflamed_95 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM239730 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis colonic_mucosa_non_inflamed_122 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM239731 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis colonic_mucosa_non_inflamed_123 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM239732 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis colonic_mucosa_non_inflamed_125 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM240022 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis colonic_mucosa_non_inflamed_76 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM240028 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis colonic_mucosa_non_inflamed_744 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the colon, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM240029 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis colonic_mucosa_non_inflamed_758 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the sigmoideum, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM240030 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis colonic_mucosa_non_inflamed_877 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the sigmoideum, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary disease match: ulcerative colitis

disease ulcerative colitis GSM240031 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence ulcerative colitis colonic_mucosa_non_inflamed_881 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the sigmoideum, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary disease match: ulcerative colitis

organism Homo sapiens GSE9452 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence homo sapiens dataset_accession: GSE9452 dataset_title: Definition of an ulcerative colitis preinflammatory state organism: Homo sapiens assay_type: microarray processed_data_available: true ... keyword match keyword match: homo sapiens

primary_tissue primary tissue GSM239617 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy Colonic_mucosa_inflammation_26 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM239618 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colonic_mucosa_inflammation_30 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM239714 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colonic_mucosa_inflamation_76 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM239716 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colonic_mucosa_inflamation_93 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM239717 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colonic_mucosa_inflamation_94 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM239718 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colonic_mucosa_inflamation_95 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM239719 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colonic_mucosa_inflamation_119 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM239720 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colonic_mucosa_inflamation_125 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM239723 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colonoc_mucosa_non_inflamed_30 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM239725 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colonic_mucosa_non_inflamed_75 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM239726 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colonic_mucosa_non_inflamed_93 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM239727 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colonic_mucosa_non_inflamed_94 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM239729 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colonic_mucosa_non_inflamed_95 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM239730 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colonic_mucosa_non_inflamed_122 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM239731 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colonic_mucosa_non_inflamed_123 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM239732 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colonic_mucosa_non_inflamed_125 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM240022 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colonic_mucosa_non_inflamed_76 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM240023 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colonic_mucosa_non_inflamed_721 Colonic mucosal endoscopic pinch biopsy Control subject, biopsy taken from the colon, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM240024 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colonic_mucosa_non_inflamed_722 Colonic mucosal endoscopic pinch biopsy Control subject, biopsy taken from the colon, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM240025 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colonic_mucosa_non_inflamed_728 Colonic mucosal endoscopic pinch biopsy Control subject, biopsy taken from the sigmoideum, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM240026 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colonic_mucosa_non_inflamed_741 Colonic mucosal endoscopic pinch biopsy Control subject, biopsy taken from the colon, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM240027 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colonic_mucosa_non_inflamed_743 Colonic mucosal endoscopic pinch biopsy Control subject, biopsy taken from the sigmoideum, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM240028 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colonic_mucosa_non_inflamed_744 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the colon, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM240029 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colonic_mucosa_non_inflamed_758 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the sigmoideum, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM240030 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colonic_mucosa_non_inflamed_877 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the sigmoideum, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary primary tissue match: biopsy

primary_tissue primary tissue GSM240031 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence biopsy colonic_mucosa_non_inflamed_881 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the sigmoideum, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary primary tissue match: biopsy

sample_type inflamed tissue GSM239617 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence inflammation Colonic_mucosa_inflammation_26 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible controlled vocabulary controlled vocabulary sample type match: inflammation

sample_type inflamed tissue GSM239618 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence inflammation colonic_mucosa_inflammation_30 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible controlled vocabulary controlled vocabulary sample type match: inflammation

sample_type inflamed tissue GSM239714 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence inflammation colonic_mucosa_inflamation_76 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible controlled vocabulary controlled vocabulary sample type match: inflammation

sample_type inflamed tissue GSM239716 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence inflammation colonic_mucosa_inflamation_93 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible controlled vocabulary controlled vocabulary sample type match: inflammation

sample_type inflamed tissue GSM239717 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence inflammation colonic_mucosa_inflamation_94 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible controlled vocabulary controlled vocabulary sample type match: inflammation

sample_type inflamed tissue GSM239718 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence inflammation colonic_mucosa_inflamation_95 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible controlled vocabulary controlled vocabulary sample type match: inflammation

sample_type inflamed tissue GSM239719 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence inflammation colonic_mucosa_inflamation_119 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible controlled vocabulary controlled vocabulary sample type match: inflammation

sample_type inflamed tissue GSM239720 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence inflammation colonic_mucosa_inflamation_125 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible controlled vocabulary controlled vocabulary sample type match: inflammation

sample_type inflamed tissue GSM239723 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence inflamed colonoc_mucosa_non_inflamed_30 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary sample type match: inflamed

sample_type inflamed tissue GSM239725 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence inflamed colonic_mucosa_non_inflamed_75 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary sample type match: inflamed

sample_type inflamed tissue GSM239726 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence inflamed colonic_mucosa_non_inflamed_93 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary sample type match: inflamed

sample_type inflamed tissue GSM239727 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence inflamed colonic_mucosa_non_inflamed_94 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary sample type match: inflamed

sample_type inflamed tissue GSM239729 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence inflamed colonic_mucosa_non_inflamed_95 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary sample type match: inflamed

sample_type inflamed tissue GSM239730 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence inflamed colonic_mucosa_non_inflamed_122 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary sample type match: inflamed

sample_type inflamed tissue GSM239731 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence inflamed colonic_mucosa_non_inflamed_123 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary sample type match: inflamed

sample_type inflamed tissue GSM239732 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence inflamed colonic_mucosa_non_inflamed_125 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary sample type match: inflamed

sample_type inflamed tissue GSM240022 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence inflamed colonic_mucosa_non_inflamed_76 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary sample type match: inflamed

sample_type inflamed tissue GSM240023 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence inflamed colonic_mucosa_non_inflamed_721 Colonic mucosal endoscopic pinch biopsy Control subject, biopsy taken from the colon, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary sample type match: inflamed

sample_type inflamed tissue GSM240024 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence inflamed colonic_mucosa_non_inflamed_722 Colonic mucosal endoscopic pinch biopsy Control subject, biopsy taken from the colon, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary sample type match: inflamed

sample_type inflamed tissue GSM240025 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence inflamed colonic_mucosa_non_inflamed_728 Colonic mucosal endoscopic pinch biopsy Control subject, biopsy taken from the sigmoideum, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary sample type match: inflamed

sample_type inflamed tissue GSM240026 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence inflamed colonic_mucosa_non_inflamed_741 Colonic mucosal endoscopic pinch biopsy Control subject, biopsy taken from the colon, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary sample type match: inflamed

sample_type inflamed tissue GSM240027 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence inflamed colonic_mucosa_non_inflamed_743 Colonic mucosal endoscopic pinch biopsy Control subject, biopsy taken from the sigmoideum, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary sample type match: inflamed

sample_type inflamed tissue GSM240028 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence inflamed colonic_mucosa_non_inflamed_744 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the colon, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary sample type match: inflamed

sample_type inflamed tissue GSM240029 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence inflamed colonic_mucosa_non_inflamed_758 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the sigmoideum, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary sample type match: inflamed

sample_type inflamed tissue GSM240030 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence inflamed colonic_mucosa_non_inflamed_877 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the sigmoideum, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary sample type match: inflamed

sample_type inflamed tissue GSM240031 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence inflamed colonic_mucosa_non_inflamed_881 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the sigmoideum, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary sample type match: inflamed

tissue colon GSE9452 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence colonic dataset_accession: GSE9452 dataset_title: Definition of an ulcerative colitis preinflammatory state organism: Homo sapiens assay_type: microarray processed_data_available: true ... controlled vocabulary controlled vocabulary tissue match: colonic

tissue colon GSM239617 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon Colonic_mucosa_inflammation_26 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM239618 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon colonic_mucosa_inflammation_30 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM239714 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon colonic_mucosa_inflamation_76 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM239716 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon colonic_mucosa_inflamation_93 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM239717 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon colonic_mucosa_inflamation_94 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM239718 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon colonic_mucosa_inflamation_95 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM239719 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon colonic_mucosa_inflamation_119 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM239720 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon colonic_mucosa_inflamation_125 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM239723 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon colonoc_mucosa_non_inflamed_30 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM239725 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon colonic_mucosa_non_inflamed_75 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM239726 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon colonic_mucosa_non_inflamed_93 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM239727 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon colonic_mucosa_non_inflamed_94 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM239729 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon colonic_mucosa_non_inflamed_95 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM239730 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon colonic_mucosa_non_inflamed_122 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM239731 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon colonic_mucosa_non_inflamed_123 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM239732 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon colonic_mucosa_non_inflamed_125 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM240022 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon colonic_mucosa_non_inflamed_76 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM240023 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon colonic_mucosa_non_inflamed_721 Colonic mucosal endoscopic pinch biopsy Control subject, biopsy taken from the colon, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM240024 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon colonic_mucosa_non_inflamed_722 Colonic mucosal endoscopic pinch biopsy Control subject, biopsy taken from the colon, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM240025 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence colonic colonic_mucosa_non_inflamed_728 Colonic mucosal endoscopic pinch biopsy Control subject, biopsy taken from the sigmoideum, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary tissue match: colonic

tissue colon GSM240026 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon colonic_mucosa_non_inflamed_741 Colonic mucosal endoscopic pinch biopsy Control subject, biopsy taken from the colon, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM240027 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence colonic colonic_mucosa_non_inflamed_743 Colonic mucosal endoscopic pinch biopsy Control subject, biopsy taken from the sigmoideum, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary tissue match: colonic

tissue colon GSM240028 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence colon colonic_mucosa_non_inflamed_744 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the colon, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary tissue match: colon

tissue colon GSM240029 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence colonic colonic_mucosa_non_inflamed_758 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the sigmoideum, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary tissue match: colonic

tissue colon GSM240030 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence colonic colonic_mucosa_non_inflamed_877 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the sigmoideum, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary tissue match: colonic

tissue colon GSM240031 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence colonic colonic_mucosa_non_inflamed_881 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the sigmoideum, no macroscopic signs of inflammation. controlled vocabulary controlled vocabulary tissue match: colonic

Sample Group Preview

26 rows shown Show Hide

Study totals: Case 8 | Control 18 | Unassigned 0 | Excluded 0 | Ambiguous 0 26 rows shown

Group	Role	Accession	Title	Source / characteristics	Reason
Inflamed tissue	Case	GSM239617	Colonic_mucosa_inflammation_26	Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible	Case marker detected.
Inflamed tissue	Case	GSM239618	Colonic_mucosa_inflammation_30	Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible	Case marker detected.
Inflamed tissue	Case	GSM239714	Colonic_mucosa_inflamation_76	Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible	Case marker detected.
Inflamed tissue	Case	GSM239716	Colonic_mucosa_inflamation_93	Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible	Case marker detected.
Inflamed tissue	Case	GSM239717	Colonic_mucosa_inflamation_94	Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible	Case marker detected.
Inflamed tissue	Case	GSM239718	Colonic_mucosa_inflamation_95	Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible	Case marker detected.
Inflamed tissue	Case	GSM239719	Colonic_mucosa_inflamation_119	Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible	Case marker detected.
Inflamed tissue	Case	GSM239720	Colonic_mucosa_inflamation_125	Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible	Case marker detected.
Non-inflamed tissue	Control	GSM239723	Colonoc_mucosa_non_inflamed_30	Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation.	Sample-local control marker detected.
Non-inflamed tissue	Control	GSM239725	Colonic_mucosa_non_inflamed_75	Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation.	Sample-local control marker detected.
Non-inflamed tissue	Control	GSM239726	Colonic_mucosa_non_inflamed_93	Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation.	Sample-local control marker detected.
Non-inflamed tissue	Control	GSM239727	Colonic_mucosa_non_inflamed_94	Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation.	Sample-local control marker detected.
Non-inflamed tissue	Control	GSM239729	Colonic_mucosa_non_inflamed_95	Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation.	Sample-local control marker detected.
Non-inflamed tissue	Control	GSM239730	Colonic_mucosa_non_inflamed_122	Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation.	Sample-local control marker detected.
Non-inflamed tissue	Control	GSM239731	Colonic_mucosa_non_inflamed_123	Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation.	Sample-local control marker detected.
Non-inflamed tissue	Control	GSM239732	Colonic_mucosa_non_inflamed_125	Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation.	Sample-local control marker detected.
Non-inflamed tissue	Control	GSM240022	Colonic_mucosa_non_inflamed_76	Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation.	Sample-local control marker detected.
Non-inflamed tissue	Control	GSM240023	Colonic_mucosa_non_inflamed_721	Colonic mucosal endoscopic pinch biopsy Control subject, biopsy taken from the colon, no macroscopic signs of inflammation.	Sample-local control marker detected.
Non-inflamed tissue	Control	GSM240024	Colonic_mucosa_non_inflamed_722	Colonic mucosal endoscopic pinch biopsy Control subject, biopsy taken from the colon, no macroscopic signs of inflammation.	Sample-local control marker detected.
Non-inflamed tissue	Control	GSM240025	Colonic_mucosa_non_inflamed_728	Colonic mucosal endoscopic pinch biopsy Control subject, biopsy taken from the sigmoideum, no macroscopic signs of inflammation.	Sample-local control marker detected.
Non-inflamed tissue	Control	GSM240026	Colonic_mucosa_non_inflamed_741	Colonic mucosal endoscopic pinch biopsy Control subject, biopsy taken from the colon, no macroscopic signs of inflammation.	Sample-local control marker detected.
Non-inflamed tissue	Control	GSM240027	Colonic_mucosa_non_inflamed_743	Colonic mucosal endoscopic pinch biopsy Control subject, biopsy taken from the sigmoideum, no macroscopic signs of inflammation.	Sample-local control marker detected.
Non-inflamed tissue	Control	GSM240028	Colonic_mucosa_non_inflamed_744	Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the colon, no macroscopic signs of inflammation.	Sample-local control marker detected.
Non-inflamed tissue	Control	GSM240029	Colonic_mucosa_non_inflamed_758	Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the sigmoideum, no macroscopic signs of inflammation.	Sample-local control marker detected.
Non-inflamed tissue	Control	GSM240030	Colonic_mucosa_non_inflamed_877	Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the sigmoideum, no macroscopic signs of inflammation.	Sample-local control marker detected.
Non-inflamed tissue	Control	GSM240031	Colonic_mucosa_non_inflamed_881	Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the sigmoideum, no macroscopic signs of inflammation.	Sample-local control marker detected.

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External Validation Finder

Carry Siftome's disease, organism, specimen, assay, data type, and accession into a validation project. Uncertain fields remain Unknown.

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Use as Discovery Cohort