Matching samples

GSE9452 · Definition of an ulcerative colitis preinflammatory state

Download matching samples CSV
Selected cohort requirements

Samples meeting selected requirements: 0 cases / 0 controls

8 case / 18 control samples elsewhere in the study have incomplete or conflicting evidence; they are not included above

Patient pairs verified in indexed sample metadata: 0

A case/control comparison meeting these requirements is not confirmed.

Counts describe samples, not independent patients. Pair verification uses explicit subject identifiers in indexed sample metadata. Zero verified pairs does not establish that the study is unpaired; reported matched-normal design alone is insufficient.

The CSV contains only the confirmed cases and controls below. Excluded and uncertain samples are shown for review and are not exported.

These are sample eligibility decisions from the current indexed metadata. Study-level search filters and minimum sample counts do not establish expression quality or analysis readiness.

Included samples (0)

No samples meet the selected requirements. The CSV contains its column headers only.

Uncertain samples (26)

These samples need more evidence before they can be counted. This includes samples without a confirmed case/control role.

GSM239617

Uncertain

Colonic_mucosa_inflammation_26

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence
  • organism: Homo sapiens — Insufficient evidence
    • The required value is not reported.
    • assay type: bulk RNA-seq — Insufficient evidence
      • The required value is not reported.
      • specimen category: Tissue or biopsy — Insufficient evidence
        • The required value is not reported.
        • Colonic_mucosa_inflammation_26 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible
        • Colonic_mucosa_inflammation_26 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible
      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
        • Supported by the indexed evidence.
        • specimen category excludes: Biofluid — Insufficient evidence
          • The required value is not reported.
          • Colonic_mucosa_inflammation_26 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible
          • Colonic_mucosa_inflammation_26 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible
        Source metadata
        Source name
        Colonic mucosal endoscopic pinch biopsy
        Characteristics
        Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible
        Description
        Not reported
        Indexed organism evidence
        INFERRED · PARENT_INHERITED: Not reported
        Indexed assay evidence
        INFERRED · PARENT_INHERITED: Not reported
        Source
        GEO
        Original indexed metadata
        sample_accession: GSM239617
sample_title: Colonic_mucosa_inflammation_26
source_name: Colonic mucosal endoscopic pinch biopsy
characteristics: Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible

        GSM239618

        Uncertain

        colonic_mucosa_inflammation_30

        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

        Requirements and decision evidence
        • organism: Homo sapiens — Insufficient evidence
          • The required value is not reported.
          • assay type: bulk RNA-seq — Insufficient evidence
            • The required value is not reported.
            • specimen category: Tissue or biopsy — Insufficient evidence
              • The required value is not reported.
              • colonic_mucosa_inflammation_30 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible
              • colonic_mucosa_inflammation_30 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible
            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
              • Supported by the indexed evidence.
              • specimen category excludes: Biofluid — Insufficient evidence
                • The required value is not reported.
                • colonic_mucosa_inflammation_30 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible
                • colonic_mucosa_inflammation_30 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible
              Source metadata
              Source name
              Colonic mucosal endoscopic pinch biopsy
              Characteristics
              Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible
              Description
              Not reported
              Indexed organism evidence
              INFERRED · PARENT_INHERITED: Not reported
              Indexed assay evidence
              INFERRED · PARENT_INHERITED: Not reported
              Source
              GEO
              Original indexed metadata
              sample_accession: GSM239618
sample_title: colonic_mucosa_inflammation_30
source_name: Colonic mucosal endoscopic pinch biopsy
characteristics: Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible

              GSM239714

              Uncertain

              colonic_mucosa_inflamation_76

              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

              Requirements and decision evidence
              • organism: Homo sapiens — Insufficient evidence
                • The required value is not reported.
                • assay type: bulk RNA-seq — Insufficient evidence
                  • The required value is not reported.
                  • specimen category: Tissue or biopsy — Insufficient evidence
                    • The required value is not reported.
                    • colonic_mucosa_inflamation_76 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible
                    • colonic_mucosa_inflamation_76 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible
                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                    • Supported by the indexed evidence.
                    • specimen category excludes: Biofluid — Insufficient evidence
                      • The required value is not reported.
                      • colonic_mucosa_inflamation_76 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible
                      • colonic_mucosa_inflamation_76 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible
                    Source metadata
                    Source name
                    Colonic mucosal endoscopic pinch biopsy
                    Characteristics
                    Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible
                    Description
                    Not reported
                    Indexed organism evidence
                    INFERRED · PARENT_INHERITED: Not reported
                    Indexed assay evidence
                    INFERRED · PARENT_INHERITED: Not reported
                    Source
                    GEO
                    Original indexed metadata
                    sample_accession: GSM239714
sample_title: colonic_mucosa_inflamation_76
source_name: Colonic mucosal endoscopic pinch biopsy
characteristics: Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible

                    GSM239716

                    Uncertain

                    colonic_mucosa_inflamation_93

                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                    Requirements and decision evidence
                    • organism: Homo sapiens — Insufficient evidence
                      • The required value is not reported.
                      • assay type: bulk RNA-seq — Insufficient evidence
                        • The required value is not reported.
                        • specimen category: Tissue or biopsy — Insufficient evidence
                          • The required value is not reported.
                          • colonic_mucosa_inflamation_93 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible
                          • colonic_mucosa_inflamation_93 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible
                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                          • Supported by the indexed evidence.
                          • specimen category excludes: Biofluid — Insufficient evidence
                            • The required value is not reported.
                            • colonic_mucosa_inflamation_93 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible
                            • colonic_mucosa_inflamation_93 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible
                          Source metadata
                          Source name
                          Colonic mucosal endoscopic pinch biopsy
                          Characteristics
                          Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible
                          Description
                          Not reported
                          Indexed organism evidence
                          INFERRED · PARENT_INHERITED: Not reported
                          Indexed assay evidence
                          INFERRED · PARENT_INHERITED: Not reported
                          Source
                          GEO
                          Original indexed metadata
                          sample_accession: GSM239716
sample_title: colonic_mucosa_inflamation_93
source_name: Colonic mucosal endoscopic pinch biopsy
characteristics: Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible

                          GSM239717

                          Uncertain

                          colonic_mucosa_inflamation_94

                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                          Requirements and decision evidence
                          • organism: Homo sapiens — Insufficient evidence
                            • The required value is not reported.
                            • assay type: bulk RNA-seq — Insufficient evidence
                              • The required value is not reported.
                              • specimen category: Tissue or biopsy — Insufficient evidence
                                • The required value is not reported.
                                • colonic_mucosa_inflamation_94 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible
                                • colonic_mucosa_inflamation_94 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible
                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                • Supported by the indexed evidence.
                                • specimen category excludes: Biofluid — Insufficient evidence
                                  • The required value is not reported.
                                  • colonic_mucosa_inflamation_94 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible
                                  • colonic_mucosa_inflamation_94 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible
                                Source metadata
                                Source name
                                Colonic mucosal endoscopic pinch biopsy
                                Characteristics
                                Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible
                                Description
                                Not reported
                                Indexed organism evidence
                                INFERRED · PARENT_INHERITED: Not reported
                                Indexed assay evidence
                                INFERRED · PARENT_INHERITED: Not reported
                                Source
                                GEO
                                Original indexed metadata
                                sample_accession: GSM239717
sample_title: colonic_mucosa_inflamation_94
source_name: Colonic mucosal endoscopic pinch biopsy
characteristics: Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible

                                GSM239718

                                Uncertain

                                colonic_mucosa_inflamation_95

                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                Requirements and decision evidence
                                • organism: Homo sapiens — Insufficient evidence
                                  • The required value is not reported.
                                  • assay type: bulk RNA-seq — Insufficient evidence
                                    • The required value is not reported.
                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                      • The required value is not reported.
                                      • colonic_mucosa_inflamation_95 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible
                                      • colonic_mucosa_inflamation_95 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible
                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                      • Supported by the indexed evidence.
                                      • specimen category excludes: Biofluid — Insufficient evidence
                                        • The required value is not reported.
                                        • colonic_mucosa_inflamation_95 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible
                                        • colonic_mucosa_inflamation_95 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible
                                      Source metadata
                                      Source name
                                      Colonic mucosal endoscopic pinch biopsy
                                      Characteristics
                                      Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible
                                      Description
                                      Not reported
                                      Indexed organism evidence
                                      INFERRED · PARENT_INHERITED: Not reported
                                      Indexed assay evidence
                                      INFERRED · PARENT_INHERITED: Not reported
                                      Source
                                      GEO
                                      Original indexed metadata
                                      sample_accession: GSM239718
sample_title: colonic_mucosa_inflamation_95
source_name: Colonic mucosal endoscopic pinch biopsy
characteristics: Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible

                                      GSM239719

                                      Uncertain

                                      colonic_mucosa_inflamation_119

                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                      Requirements and decision evidence
                                      • organism: Homo sapiens — Insufficient evidence
                                        • The required value is not reported.
                                        • assay type: bulk RNA-seq — Insufficient evidence
                                          • The required value is not reported.
                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                            • The required value is not reported.
                                            • colonic_mucosa_inflamation_119 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible
                                            • colonic_mucosa_inflamation_119 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible
                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                            • Supported by the indexed evidence.
                                            • specimen category excludes: Biofluid — Insufficient evidence
                                              • The required value is not reported.
                                              • colonic_mucosa_inflamation_119 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible
                                              • colonic_mucosa_inflamation_119 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible
                                            Source metadata
                                            Source name
                                            Colonic mucosal endoscopic pinch biopsy
                                            Characteristics
                                            Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible
                                            Description
                                            Not reported
                                            Indexed organism evidence
                                            INFERRED · PARENT_INHERITED: Not reported
                                            Indexed assay evidence
                                            INFERRED · PARENT_INHERITED: Not reported
                                            Source
                                            GEO
                                            Original indexed metadata
                                            sample_accession: GSM239719
sample_title: colonic_mucosa_inflamation_119
source_name: Colonic mucosal endoscopic pinch biopsy
characteristics: Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible

                                            GSM239720

                                            Uncertain

                                            colonic_mucosa_inflamation_125

                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

                                            Requirements and decision evidence
                                            • organism: Homo sapiens — Insufficient evidence
                                              • The required value is not reported.
                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                • The required value is not reported.
                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                  • The required value is not reported.
                                                  • colonic_mucosa_inflamation_125 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible
                                                  • colonic_mucosa_inflamation_125 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible
                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                  • Supported by the indexed evidence.
                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                    • The required value is not reported.
                                                    • colonic_mucosa_inflamation_125 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible
                                                    • colonic_mucosa_inflamation_125 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible
                                                  Source metadata
                                                  Source name
                                                  Colonic mucosal endoscopic pinch biopsy
                                                  Characteristics
                                                  Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible
                                                  Description
                                                  Not reported
                                                  Indexed organism evidence
                                                  INFERRED · PARENT_INHERITED: Not reported
                                                  Indexed assay evidence
                                                  INFERRED · PARENT_INHERITED: Not reported
                                                  Source
                                                  GEO
                                                  Original indexed metadata
                                                  sample_accession: GSM239720
sample_title: colonic_mucosa_inflamation_125
source_name: Colonic mucosal endoscopic pinch biopsy
characteristics: Ulcerative colitis patient, biopsy taken from the descending colon, macroscopic inflammation vissible

                                                  GSM239723

                                                  Uncertain

                                                  colonoc_mucosa_non_inflamed_30

                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                  Requirements and decision evidence
                                                  • organism: Homo sapiens — Insufficient evidence
                                                    • The required value is not reported.
                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                      • The required value is not reported.
                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                        • The required value is not reported.
                                                        • colonoc_mucosa_non_inflamed_30 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation.
                                                        • colonoc_mucosa_non_inflamed_30 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation.
                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                        • Supported by the indexed evidence.
                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                          • The required value is not reported.
                                                          • colonoc_mucosa_non_inflamed_30 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation.
                                                          • colonoc_mucosa_non_inflamed_30 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation.
                                                        Source metadata
                                                        Source name
                                                        Colonic mucosal endoscopic pinch biopsy
                                                        Characteristics
                                                        Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation.
                                                        Description
                                                        Not reported
                                                        Indexed organism evidence
                                                        INFERRED · PARENT_INHERITED: Not reported
                                                        Indexed assay evidence
                                                        INFERRED · PARENT_INHERITED: Not reported
                                                        Source
                                                        GEO
                                                        Original indexed metadata
                                                        sample_accession: GSM239723
sample_title: colonoc_mucosa_non_inflamed_30
source_name: Colonic mucosal endoscopic pinch biopsy
characteristics: Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation.

                                                        GSM239725

                                                        Uncertain

                                                        colonic_mucosa_non_inflamed_75

                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                        Requirements and decision evidence
                                                        • organism: Homo sapiens — Insufficient evidence
                                                          • The required value is not reported.
                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                            • The required value is not reported.
                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                              • The required value is not reported.
                                                              • colonic_mucosa_non_inflamed_75 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation.
                                                              • colonic_mucosa_non_inflamed_75 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation.
                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                              • Supported by the indexed evidence.
                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                • The required value is not reported.
                                                                • colonic_mucosa_non_inflamed_75 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation.
                                                                • colonic_mucosa_non_inflamed_75 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation.
                                                              Source metadata
                                                              Source name
                                                              Colonic mucosal endoscopic pinch biopsy
                                                              Characteristics
                                                              Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation.
                                                              Description
                                                              Not reported
                                                              Indexed organism evidence
                                                              INFERRED · PARENT_INHERITED: Not reported
                                                              Indexed assay evidence
                                                              INFERRED · PARENT_INHERITED: Not reported
                                                              Source
                                                              GEO
                                                              Original indexed metadata
                                                              sample_accession: GSM239725
sample_title: colonic_mucosa_non_inflamed_75
source_name: Colonic mucosal endoscopic pinch biopsy
characteristics: Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation.

                                                              GSM239726

                                                              Uncertain

                                                              colonic_mucosa_non_inflamed_93

                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                              Requirements and decision evidence
                                                              • organism: Homo sapiens — Insufficient evidence
                                                                • The required value is not reported.
                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                  • The required value is not reported.
                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                    • The required value is not reported.
                                                                    • colonic_mucosa_non_inflamed_93 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation.
                                                                    • colonic_mucosa_non_inflamed_93 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation.
                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                    • Supported by the indexed evidence.
                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                      • The required value is not reported.
                                                                      • colonic_mucosa_non_inflamed_93 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation.
                                                                      • colonic_mucosa_non_inflamed_93 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation.
                                                                    Source metadata
                                                                    Source name
                                                                    Colonic mucosal endoscopic pinch biopsy
                                                                    Characteristics
                                                                    Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation.
                                                                    Description
                                                                    Not reported
                                                                    Indexed organism evidence
                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                    Indexed assay evidence
                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                    Source
                                                                    GEO
                                                                    Original indexed metadata
                                                                    sample_accession: GSM239726
sample_title: colonic_mucosa_non_inflamed_93
source_name: Colonic mucosal endoscopic pinch biopsy
characteristics: Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation.

                                                                    GSM239727

                                                                    Uncertain

                                                                    colonic_mucosa_non_inflamed_94

                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                    Requirements and decision evidence
                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                      • The required value is not reported.
                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                        • The required value is not reported.
                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                          • The required value is not reported.
                                                                          • colonic_mucosa_non_inflamed_94 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation.
                                                                          • colonic_mucosa_non_inflamed_94 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation.
                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                          • Supported by the indexed evidence.
                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                            • The required value is not reported.
                                                                            • colonic_mucosa_non_inflamed_94 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation.
                                                                            • colonic_mucosa_non_inflamed_94 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation.
                                                                          Source metadata
                                                                          Source name
                                                                          Colonic mucosal endoscopic pinch biopsy
                                                                          Characteristics
                                                                          Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation.
                                                                          Description
                                                                          Not reported
                                                                          Indexed organism evidence
                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                          Indexed assay evidence
                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                          Source
                                                                          GEO
                                                                          Original indexed metadata
                                                                          sample_accession: GSM239727
sample_title: colonic_mucosa_non_inflamed_94
source_name: Colonic mucosal endoscopic pinch biopsy
characteristics: Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation.

                                                                          GSM239729

                                                                          Uncertain

                                                                          colonic_mucosa_non_inflamed_95

                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                          Requirements and decision evidence
                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                            • The required value is not reported.
                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                              • The required value is not reported.
                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                • The required value is not reported.
                                                                                • colonic_mucosa_non_inflamed_95 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation.
                                                                                • colonic_mucosa_non_inflamed_95 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation.
                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                • Supported by the indexed evidence.
                                                                                • specimen category excludes: Biofluid — Insufficient evidence
                                                                                  • The required value is not reported.
                                                                                  • colonic_mucosa_non_inflamed_95 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation.
                                                                                  • colonic_mucosa_non_inflamed_95 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation.
                                                                                Source metadata
                                                                                Source name
                                                                                Colonic mucosal endoscopic pinch biopsy
                                                                                Characteristics
                                                                                Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation.
                                                                                Description
                                                                                Not reported
                                                                                Indexed organism evidence
                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                Indexed assay evidence
                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                Source
                                                                                GEO
                                                                                Original indexed metadata
                                                                                sample_accession: GSM239729
sample_title: colonic_mucosa_non_inflamed_95
source_name: Colonic mucosal endoscopic pinch biopsy
characteristics: Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation.

                                                                                GSM239730

                                                                                Uncertain

                                                                                colonic_mucosa_non_inflamed_122

                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                Requirements and decision evidence
                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                  • The required value is not reported.
                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                    • The required value is not reported.
                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                      • The required value is not reported.
                                                                                      • colonic_mucosa_non_inflamed_122 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation.
                                                                                      • colonic_mucosa_non_inflamed_122 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation.
                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                      • Supported by the indexed evidence.
                                                                                      • specimen category excludes: Biofluid — Insufficient evidence
                                                                                        • The required value is not reported.
                                                                                        • colonic_mucosa_non_inflamed_122 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation.
                                                                                        • colonic_mucosa_non_inflamed_122 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation.
                                                                                      Source metadata
                                                                                      Source name
                                                                                      Colonic mucosal endoscopic pinch biopsy
                                                                                      Characteristics
                                                                                      Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation.
                                                                                      Description
                                                                                      Not reported
                                                                                      Indexed organism evidence
                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                      Indexed assay evidence
                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                      Source
                                                                                      GEO
                                                                                      Original indexed metadata
                                                                                      sample_accession: GSM239730
sample_title: colonic_mucosa_non_inflamed_122
source_name: Colonic mucosal endoscopic pinch biopsy
characteristics: Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation.

                                                                                      GSM239731

                                                                                      Uncertain

                                                                                      colonic_mucosa_non_inflamed_123

                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                      Requirements and decision evidence
                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                        • The required value is not reported.
                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                          • The required value is not reported.
                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                            • The required value is not reported.
                                                                                            • colonic_mucosa_non_inflamed_123 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation.
                                                                                            • colonic_mucosa_non_inflamed_123 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation.
                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                            • Supported by the indexed evidence.
                                                                                            • specimen category excludes: Biofluid — Insufficient evidence
                                                                                              • The required value is not reported.
                                                                                              • colonic_mucosa_non_inflamed_123 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation.
                                                                                              • colonic_mucosa_non_inflamed_123 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation.
                                                                                            Source metadata
                                                                                            Source name
                                                                                            Colonic mucosal endoscopic pinch biopsy
                                                                                            Characteristics
                                                                                            Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation.
                                                                                            Description
                                                                                            Not reported
                                                                                            Indexed organism evidence
                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                            Indexed assay evidence
                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                            Source
                                                                                            GEO
                                                                                            Original indexed metadata
                                                                                            sample_accession: GSM239731
sample_title: colonic_mucosa_non_inflamed_123
source_name: Colonic mucosal endoscopic pinch biopsy
characteristics: Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation.

                                                                                            GSM239732

                                                                                            Uncertain

                                                                                            colonic_mucosa_non_inflamed_125

                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                            Requirements and decision evidence
                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                              • The required value is not reported.
                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                • The required value is not reported.
                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                  • The required value is not reported.
                                                                                                  • colonic_mucosa_non_inflamed_125 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation.
                                                                                                  • colonic_mucosa_non_inflamed_125 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation.
                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                  • Supported by the indexed evidence.
                                                                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                    • The required value is not reported.
                                                                                                    • colonic_mucosa_non_inflamed_125 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation.
                                                                                                    • colonic_mucosa_non_inflamed_125 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation.
                                                                                                  Source metadata
                                                                                                  Source name
                                                                                                  Colonic mucosal endoscopic pinch biopsy
                                                                                                  Characteristics
                                                                                                  Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation.
                                                                                                  Description
                                                                                                  Not reported
                                                                                                  Indexed organism evidence
                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                  Indexed assay evidence
                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                  Source
                                                                                                  GEO
                                                                                                  Original indexed metadata
                                                                                                  sample_accession: GSM239732
sample_title: colonic_mucosa_non_inflamed_125
source_name: Colonic mucosal endoscopic pinch biopsy
characteristics: Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation.

                                                                                                  GSM240022

                                                                                                  Uncertain

                                                                                                  colonic_mucosa_non_inflamed_76

                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                  Requirements and decision evidence
                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                    • The required value is not reported.
                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                      • The required value is not reported.
                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                        • The required value is not reported.
                                                                                                        • colonic_mucosa_non_inflamed_76 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation.
                                                                                                        • colonic_mucosa_non_inflamed_76 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation.
                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                        • Supported by the indexed evidence.
                                                                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                          • The required value is not reported.
                                                                                                          • colonic_mucosa_non_inflamed_76 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation.
                                                                                                          • colonic_mucosa_non_inflamed_76 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation.
                                                                                                        Source metadata
                                                                                                        Source name
                                                                                                        Colonic mucosal endoscopic pinch biopsy
                                                                                                        Characteristics
                                                                                                        Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation.
                                                                                                        Description
                                                                                                        Not reported
                                                                                                        Indexed organism evidence
                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                        Indexed assay evidence
                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                        Source
                                                                                                        GEO
                                                                                                        Original indexed metadata
                                                                                                        sample_accession: GSM240022
sample_title: colonic_mucosa_non_inflamed_76
source_name: Colonic mucosal endoscopic pinch biopsy
characteristics: Ulcerative colitis patient, biopsy taken from the descending colon, no macroscopic signs of inflammation.

                                                                                                        GSM240023

                                                                                                        Uncertain

                                                                                                        colonic_mucosa_non_inflamed_721

                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                        Requirements and decision evidence
                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                          • The required value is not reported.
                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                            • The required value is not reported.
                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                              • The required value is not reported.
                                                                                                              • colonic_mucosa_non_inflamed_721 Colonic mucosal endoscopic pinch biopsy Control subject, biopsy taken from the colon, no macroscopic signs of inflammation.
                                                                                                              • colonic_mucosa_non_inflamed_721 Colonic mucosal endoscopic pinch biopsy Control subject, biopsy taken from the colon, no macroscopic signs of inflammation.
                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                              • Supported by the indexed evidence.
                                                                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                • The required value is not reported.
                                                                                                                • colonic_mucosa_non_inflamed_721 Colonic mucosal endoscopic pinch biopsy Control subject, biopsy taken from the colon, no macroscopic signs of inflammation.
                                                                                                                • colonic_mucosa_non_inflamed_721 Colonic mucosal endoscopic pinch biopsy Control subject, biopsy taken from the colon, no macroscopic signs of inflammation.
                                                                                                              Source metadata
                                                                                                              Source name
                                                                                                              Colonic mucosal endoscopic pinch biopsy
                                                                                                              Characteristics
                                                                                                              Control subject, biopsy taken from the colon, no macroscopic signs of inflammation.
                                                                                                              Description
                                                                                                              Not reported
                                                                                                              Indexed organism evidence
                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                              Indexed assay evidence
                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                              Source
                                                                                                              GEO
                                                                                                              Original indexed metadata
                                                                                                              sample_accession: GSM240023
sample_title: colonic_mucosa_non_inflamed_721
source_name: Colonic mucosal endoscopic pinch biopsy
characteristics: Control subject, biopsy taken from the colon, no macroscopic signs of inflammation.

                                                                                                              GSM240024

                                                                                                              Uncertain

                                                                                                              colonic_mucosa_non_inflamed_722

                                                                                                              Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                              Requirements and decision evidence
                                                                                                              • organism: Homo sapiens — Insufficient evidence
                                                                                                                • The required value is not reported.
                                                                                                                • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                  • The required value is not reported.
                                                                                                                  • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                    • The required value is not reported.
                                                                                                                    • colonic_mucosa_non_inflamed_722 Colonic mucosal endoscopic pinch biopsy Control subject, biopsy taken from the colon, no macroscopic signs of inflammation.
                                                                                                                    • colonic_mucosa_non_inflamed_722 Colonic mucosal endoscopic pinch biopsy Control subject, biopsy taken from the colon, no macroscopic signs of inflammation.
                                                                                                                  • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                    • Supported by the indexed evidence.
                                                                                                                    • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                      • The required value is not reported.
                                                                                                                      • colonic_mucosa_non_inflamed_722 Colonic mucosal endoscopic pinch biopsy Control subject, biopsy taken from the colon, no macroscopic signs of inflammation.
                                                                                                                      • colonic_mucosa_non_inflamed_722 Colonic mucosal endoscopic pinch biopsy Control subject, biopsy taken from the colon, no macroscopic signs of inflammation.
                                                                                                                    Source metadata
                                                                                                                    Source name
                                                                                                                    Colonic mucosal endoscopic pinch biopsy
                                                                                                                    Characteristics
                                                                                                                    Control subject, biopsy taken from the colon, no macroscopic signs of inflammation.
                                                                                                                    Description
                                                                                                                    Not reported
                                                                                                                    Indexed organism evidence
                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                    Indexed assay evidence
                                                                                                                    INFERRED · PARENT_INHERITED: Not reported
                                                                                                                    Source
                                                                                                                    GEO
                                                                                                                    Original indexed metadata
                                                                                                                    sample_accession: GSM240024
sample_title: colonic_mucosa_non_inflamed_722
source_name: Colonic mucosal endoscopic pinch biopsy
characteristics: Control subject, biopsy taken from the colon, no macroscopic signs of inflammation.

                                                                                                                    GSM240025

                                                                                                                    Uncertain

                                                                                                                    colonic_mucosa_non_inflamed_728

                                                                                                                    Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                    Requirements and decision evidence
                                                                                                                    • organism: Homo sapiens — Insufficient evidence
                                                                                                                      • The required value is not reported.
                                                                                                                      • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                        • The required value is not reported.
                                                                                                                        • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                          • The required value is not reported.
                                                                                                                          • colonic_mucosa_non_inflamed_728 Colonic mucosal endoscopic pinch biopsy Control subject, biopsy taken from the sigmoideum, no macroscopic signs of inflammation.
                                                                                                                          • colonic_mucosa_non_inflamed_728 Colonic mucosal endoscopic pinch biopsy Control subject, biopsy taken from the sigmoideum, no macroscopic signs of inflammation.
                                                                                                                        • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                          • Supported by the indexed evidence.
                                                                                                                          • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                            • The required value is not reported.
                                                                                                                            • colonic_mucosa_non_inflamed_728 Colonic mucosal endoscopic pinch biopsy Control subject, biopsy taken from the sigmoideum, no macroscopic signs of inflammation.
                                                                                                                            • colonic_mucosa_non_inflamed_728 Colonic mucosal endoscopic pinch biopsy Control subject, biopsy taken from the sigmoideum, no macroscopic signs of inflammation.
                                                                                                                          Source metadata
                                                                                                                          Source name
                                                                                                                          Colonic mucosal endoscopic pinch biopsy
                                                                                                                          Characteristics
                                                                                                                          Control subject, biopsy taken from the sigmoideum, no macroscopic signs of inflammation.
                                                                                                                          Description
                                                                                                                          Not reported
                                                                                                                          Indexed organism evidence
                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                          Indexed assay evidence
                                                                                                                          INFERRED · PARENT_INHERITED: Not reported
                                                                                                                          Source
                                                                                                                          GEO
                                                                                                                          Original indexed metadata
                                                                                                                          sample_accession: GSM240025
sample_title: colonic_mucosa_non_inflamed_728
source_name: Colonic mucosal endoscopic pinch biopsy
characteristics: Control subject, biopsy taken from the sigmoideum, no macroscopic signs of inflammation.

                                                                                                                          GSM240026

                                                                                                                          Uncertain

                                                                                                                          colonic_mucosa_non_inflamed_741

                                                                                                                          Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                          Requirements and decision evidence
                                                                                                                          • organism: Homo sapiens — Insufficient evidence
                                                                                                                            • The required value is not reported.
                                                                                                                            • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                              • The required value is not reported.
                                                                                                                              • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                • The required value is not reported.
                                                                                                                                • colonic_mucosa_non_inflamed_741 Colonic mucosal endoscopic pinch biopsy Control subject, biopsy taken from the colon, no macroscopic signs of inflammation.
                                                                                                                                • colonic_mucosa_non_inflamed_741 Colonic mucosal endoscopic pinch biopsy Control subject, biopsy taken from the colon, no macroscopic signs of inflammation.
                                                                                                                              • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                • Supported by the indexed evidence.
                                                                                                                                • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                  • The required value is not reported.
                                                                                                                                  • colonic_mucosa_non_inflamed_741 Colonic mucosal endoscopic pinch biopsy Control subject, biopsy taken from the colon, no macroscopic signs of inflammation.
                                                                                                                                  • colonic_mucosa_non_inflamed_741 Colonic mucosal endoscopic pinch biopsy Control subject, biopsy taken from the colon, no macroscopic signs of inflammation.
                                                                                                                                Source metadata
                                                                                                                                Source name
                                                                                                                                Colonic mucosal endoscopic pinch biopsy
                                                                                                                                Characteristics
                                                                                                                                Control subject, biopsy taken from the colon, no macroscopic signs of inflammation.
                                                                                                                                Description
                                                                                                                                Not reported
                                                                                                                                Indexed organism evidence
                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                Indexed assay evidence
                                                                                                                                INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                Source
                                                                                                                                GEO
                                                                                                                                Original indexed metadata
                                                                                                                                sample_accession: GSM240026
sample_title: colonic_mucosa_non_inflamed_741
source_name: Colonic mucosal endoscopic pinch biopsy
characteristics: Control subject, biopsy taken from the colon, no macroscopic signs of inflammation.

                                                                                                                                GSM240027

                                                                                                                                Uncertain

                                                                                                                                colonic_mucosa_non_inflamed_743

                                                                                                                                Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                Requirements and decision evidence
                                                                                                                                • organism: Homo sapiens — Insufficient evidence
                                                                                                                                  • The required value is not reported.
                                                                                                                                  • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                    • The required value is not reported.
                                                                                                                                    • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                      • The required value is not reported.
                                                                                                                                      • colonic_mucosa_non_inflamed_743 Colonic mucosal endoscopic pinch biopsy Control subject, biopsy taken from the sigmoideum, no macroscopic signs of inflammation.
                                                                                                                                      • colonic_mucosa_non_inflamed_743 Colonic mucosal endoscopic pinch biopsy Control subject, biopsy taken from the sigmoideum, no macroscopic signs of inflammation.
                                                                                                                                    • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                      • Supported by the indexed evidence.
                                                                                                                                      • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                        • The required value is not reported.
                                                                                                                                        • colonic_mucosa_non_inflamed_743 Colonic mucosal endoscopic pinch biopsy Control subject, biopsy taken from the sigmoideum, no macroscopic signs of inflammation.
                                                                                                                                        • colonic_mucosa_non_inflamed_743 Colonic mucosal endoscopic pinch biopsy Control subject, biopsy taken from the sigmoideum, no macroscopic signs of inflammation.
                                                                                                                                      Source metadata
                                                                                                                                      Source name
                                                                                                                                      Colonic mucosal endoscopic pinch biopsy
                                                                                                                                      Characteristics
                                                                                                                                      Control subject, biopsy taken from the sigmoideum, no macroscopic signs of inflammation.
                                                                                                                                      Description
                                                                                                                                      Not reported
                                                                                                                                      Indexed organism evidence
                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                      Indexed assay evidence
                                                                                                                                      INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                      Source
                                                                                                                                      GEO
                                                                                                                                      Original indexed metadata
                                                                                                                                      sample_accession: GSM240027
sample_title: colonic_mucosa_non_inflamed_743
source_name: Colonic mucosal endoscopic pinch biopsy
characteristics: Control subject, biopsy taken from the sigmoideum, no macroscopic signs of inflammation.

                                                                                                                                      GSM240028

                                                                                                                                      Uncertain

                                                                                                                                      colonic_mucosa_non_inflamed_744

                                                                                                                                      Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                      Requirements and decision evidence
                                                                                                                                      • organism: Homo sapiens — Insufficient evidence
                                                                                                                                        • The required value is not reported.
                                                                                                                                        • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                          • The required value is not reported.
                                                                                                                                          • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                            • The required value is not reported.
                                                                                                                                            • colonic_mucosa_non_inflamed_744 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the colon, no macroscopic signs of inflammation.
                                                                                                                                            • colonic_mucosa_non_inflamed_744 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the colon, no macroscopic signs of inflammation.
                                                                                                                                          • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                            • Supported by the indexed evidence.
                                                                                                                                            • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                              • The required value is not reported.
                                                                                                                                              • colonic_mucosa_non_inflamed_744 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the colon, no macroscopic signs of inflammation.
                                                                                                                                              • colonic_mucosa_non_inflamed_744 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the colon, no macroscopic signs of inflammation.
                                                                                                                                            Source metadata
                                                                                                                                            Source name
                                                                                                                                            Colonic mucosal endoscopic pinch biopsy
                                                                                                                                            Characteristics
                                                                                                                                            Ulcerative colitis patient, biopsy taken from the colon, no macroscopic signs of inflammation.
                                                                                                                                            Description
                                                                                                                                            Not reported
                                                                                                                                            Indexed organism evidence
                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                            Indexed assay evidence
                                                                                                                                            INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                            Source
                                                                                                                                            GEO
                                                                                                                                            Original indexed metadata
                                                                                                                                            sample_accession: GSM240028
sample_title: colonic_mucosa_non_inflamed_744
source_name: Colonic mucosal endoscopic pinch biopsy
characteristics: Ulcerative colitis patient, biopsy taken from the colon, no macroscopic signs of inflammation.

                                                                                                                                            GSM240029

                                                                                                                                            Uncertain

                                                                                                                                            colonic_mucosa_non_inflamed_758

                                                                                                                                            Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                            Requirements and decision evidence
                                                                                                                                            • organism: Homo sapiens — Insufficient evidence
                                                                                                                                              • The required value is not reported.
                                                                                                                                              • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                • The required value is not reported.
                                                                                                                                                • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                  • The required value is not reported.
                                                                                                                                                  • colonic_mucosa_non_inflamed_758 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the sigmoideum, no macroscopic signs of inflammation.
                                                                                                                                                  • colonic_mucosa_non_inflamed_758 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the sigmoideum, no macroscopic signs of inflammation.
                                                                                                                                                • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                  • Supported by the indexed evidence.
                                                                                                                                                  • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                    • The required value is not reported.
                                                                                                                                                    • colonic_mucosa_non_inflamed_758 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the sigmoideum, no macroscopic signs of inflammation.
                                                                                                                                                    • colonic_mucosa_non_inflamed_758 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the sigmoideum, no macroscopic signs of inflammation.
                                                                                                                                                  Source metadata
                                                                                                                                                  Source name
                                                                                                                                                  Colonic mucosal endoscopic pinch biopsy
                                                                                                                                                  Characteristics
                                                                                                                                                  Ulcerative colitis patient, biopsy taken from the sigmoideum, no macroscopic signs of inflammation.
                                                                                                                                                  Description
                                                                                                                                                  Not reported
                                                                                                                                                  Indexed organism evidence
                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                  Indexed assay evidence
                                                                                                                                                  INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                  Source
                                                                                                                                                  GEO
                                                                                                                                                  Original indexed metadata
                                                                                                                                                  sample_accession: GSM240029
sample_title: colonic_mucosa_non_inflamed_758
source_name: Colonic mucosal endoscopic pinch biopsy
characteristics: Ulcerative colitis patient, biopsy taken from the sigmoideum, no macroscopic signs of inflammation.

                                                                                                                                                  GSM240030

                                                                                                                                                  Uncertain

                                                                                                                                                  colonic_mucosa_non_inflamed_877

                                                                                                                                                  Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                  Requirements and decision evidence
                                                                                                                                                  • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                    • The required value is not reported.
                                                                                                                                                    • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                      • The required value is not reported.
                                                                                                                                                      • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                        • The required value is not reported.
                                                                                                                                                        • colonic_mucosa_non_inflamed_877 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the sigmoideum, no macroscopic signs of inflammation.
                                                                                                                                                        • colonic_mucosa_non_inflamed_877 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the sigmoideum, no macroscopic signs of inflammation.
                                                                                                                                                      • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                        • Supported by the indexed evidence.
                                                                                                                                                        • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                          • The required value is not reported.
                                                                                                                                                          • colonic_mucosa_non_inflamed_877 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the sigmoideum, no macroscopic signs of inflammation.
                                                                                                                                                          • colonic_mucosa_non_inflamed_877 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the sigmoideum, no macroscopic signs of inflammation.
                                                                                                                                                        Source metadata
                                                                                                                                                        Source name
                                                                                                                                                        Colonic mucosal endoscopic pinch biopsy
                                                                                                                                                        Characteristics
                                                                                                                                                        Ulcerative colitis patient, biopsy taken from the sigmoideum, no macroscopic signs of inflammation.
                                                                                                                                                        Description
                                                                                                                                                        Not reported
                                                                                                                                                        Indexed organism evidence
                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                        Indexed assay evidence
                                                                                                                                                        INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                        Source
                                                                                                                                                        GEO
                                                                                                                                                        Original indexed metadata
                                                                                                                                                        sample_accession: GSM240030
sample_title: colonic_mucosa_non_inflamed_877
source_name: Colonic mucosal endoscopic pinch biopsy
characteristics: Ulcerative colitis patient, biopsy taken from the sigmoideum, no macroscopic signs of inflammation.

                                                                                                                                                        GSM240031

                                                                                                                                                        Uncertain

                                                                                                                                                        colonic_mucosa_non_inflamed_881

                                                                                                                                                        Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Sample-local control marker detected.

                                                                                                                                                        Requirements and decision evidence
                                                                                                                                                        • organism: Homo sapiens — Insufficient evidence
                                                                                                                                                          • The required value is not reported.
                                                                                                                                                          • assay type: bulk RNA-seq — Insufficient evidence
                                                                                                                                                            • The required value is not reported.
                                                                                                                                                            • specimen category: Tissue or biopsy — Insufficient evidence
                                                                                                                                                              • The required value is not reported.
                                                                                                                                                              • colonic_mucosa_non_inflamed_881 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the sigmoideum, no macroscopic signs of inflammation.
                                                                                                                                                              • colonic_mucosa_non_inflamed_881 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the sigmoideum, no macroscopic signs of inflammation.
                                                                                                                                                            • excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
                                                                                                                                                              • Supported by the indexed evidence.
                                                                                                                                                              • specimen category excludes: Biofluid — Insufficient evidence
                                                                                                                                                                • The required value is not reported.
                                                                                                                                                                • colonic_mucosa_non_inflamed_881 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the sigmoideum, no macroscopic signs of inflammation.
                                                                                                                                                                • colonic_mucosa_non_inflamed_881 Colonic mucosal endoscopic pinch biopsy Ulcerative colitis patient, biopsy taken from the sigmoideum, no macroscopic signs of inflammation.
                                                                                                                                                              Source metadata
                                                                                                                                                              Source name
                                                                                                                                                              Colonic mucosal endoscopic pinch biopsy
                                                                                                                                                              Characteristics
                                                                                                                                                              Ulcerative colitis patient, biopsy taken from the sigmoideum, no macroscopic signs of inflammation.
                                                                                                                                                              Description
                                                                                                                                                              Not reported
                                                                                                                                                              Indexed organism evidence
                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                              Indexed assay evidence
                                                                                                                                                              INFERRED · PARENT_INHERITED: Not reported
                                                                                                                                                              Source
                                                                                                                                                              GEO
                                                                                                                                                              Original indexed metadata
                                                                                                                                                              sample_accession: GSM240031
sample_title: colonic_mucosa_non_inflamed_881
source_name: Colonic mucosal endoscopic pinch biopsy
characteristics: Ulcerative colitis patient, biopsy taken from the sigmoideum, no macroscopic signs of inflammation.

                                                                                                                                                              Excluded samples (0)

                                                                                                                                                              No excluded samples.