Differential Gene Expression between involved and uninvolved sites of Crohn’s disease: Insights into a Distinctive Pathogenesis Profile

Whole-study status Not suitable

Dataset does not meet the current suitability threshold.

Whole-study downloads — these do not apply your sample requirements.

Selected cohort requirements

Samples meeting selected requirements: 0 cases / 0 controls

48 case / 12 control samples elsewhere in the study have incomplete or conflicting evidence; they are not included above

Patient pairs verified in indexed sample metadata: 0

A case/control comparison meeting these requirements is not confirmed.

Counts describe samples, not independent patients. Pair verification uses explicit subject identifiers in indexed sample metadata. Zero verified pairs does not establish that the study is unpaired; reported matched-normal design alone is insufficient.

Source: GEO
Assay: microarray
Organism: Homo sapiens
Whole-study samples: 60 samples
Specimen: Tissue
Reported/interpreted study design: Disease/model vs control Design classification does not establish patient pairs.

Comparison type: Tumor vs normal
Contributors: Zhao X
Contact name: Xinmei Zhao
Submission date: 2017-02-20
Last update: 2019-02-20
Organization: Nanfang Hospital, Southern Medical University
Department: Not available
Public date: 2019-02-20
Experiment types: Expression profiling by array
Platforms: GPL14951 Illumina HumanHT-12 WG-DASL V4.0 R2 expression beadchip
Series type: Series
SubSeries: Not available
BioProject: PRJNA376043

Summary

Our objective was to elucidate patterns of gene expression underlying the progression of CD disease. Surgery biopsies (n=60) were assayed using the Illumina cDNA-mediated Annealing, Selection, Extension, and Ligation (DASL) microarray process specifically designed for use with Formalin-Fixed, Paraffin-Embedded (FFPE) clinical samples. Tissue was sampled in consecutive active involved and uninvolved sites at the same time in individual CD patients, and these samples (CD involved and CD uninvolved) were compared with each other as well as to non-inflammatory bowel disease (non-IBD) healthy controls.

Overall design

Gene expression of CD involved and uninvolved is compared at a global level using total RNA from the same CD pateints using the Illumina microarray platform.

Source Evidence

4 sources

Source	Contribution	Status
GEO	Original dataset metadata, sample metadata, source links, and GEO data availability flags. Sample records 60 GSM samples	Primary source
recount3	Planned trusted source for processed count availability.	No match found
Expression Atlas	Planned source for curated expression experiment links.	No match found
PubMed	Primary GEO citations and related PubMed articles that mention this dataset. 10 linked publications 10 DOIs Related publications CXCL8 as a Potential Biomarker for Crohn's Disease is Associated with Immune Infiltration and RNA Methylation. Biochemical genetics, 2023 PubMed DOI Integrated multiple microarray studies by robust rank aggregation to identify immune-associated biomarkers in Crohn's disease based on three machine learning methods. Scientific reports, 2023 PubMed DOI Cross talk between bacterial and human gene networks enriched using ncRNAs in IBD disease. Scientific reports, 2023 PubMed DOI Identification of ubiquitination-related key biomarkers and immune infiltration in Crohn's disease by bioinformatics analysis and machine learning. Scientific reports, 2025 PubMed DOI Integrated Multiomics Elucidates Molecular Mechanisms of Bisphenol A in Exacerbating Crohn's Disease. Mediators of inflammation, 2026 PubMed DOI Uncovering common disease mechanisms and critical biomarkers in Crohn's disease with concurrent psoriasis and exploring potential therapeutic agents. PloS one, 2025 PubMed DOI C-X-C Motif Chemokine 12 Was Identified as a Potential Gene Target in the Treatment of Crohn's Disease. International journal of general medicine, 2024 PubMed DOI Neutrophil Infiltration Characterized by Upregulation of S100A8, S100A9, S100A12 and CXCR2 Is Associated With the Co-Occurrence of Crohn's Disease and Peripheral Artery Disease. Frontiers in immunology, 2022 PubMed DOI Identification and validation of the common pathogenesis and hub biomarkers in Hirschsprung disease complicated with Crohn's disease. Frontiers in immunology, 2022 PubMed DOI Analysis of ferroptosis-associated genes in Crohn's disease based on bioinformatics. Frontiers in medicine, 2022 PubMed DOI	Available

Metadata Quality Components

Persisted metadata quality

100 pts

Clarity: 100%
Weight: 100 pts

Sample source clarity: All samples have source metadata and clear GSE/GSM accessions. Group clarity: Rule-based grouping found both case and control samples. Disease clarity: Disease or condition metadata normalized. Tissue clarity: Anatomical source metadata normalized. Treatment clarity: No unclear treatment split detected in the sample metadata. Replicate clarity: No pooled sample or technical replicate flags detected. Data availability clarity: Dataset-level processed or raw data availability is explicit.

Analysis Readiness

Ready after review

97% DE readiness

Contrast completeness

25/25 pts

Both case and control groups are present in the proposed grouping.

Minimum group size

20/20 pts

Each contrast group has at least 2 samples.

Processed data availability

20/20 pts

Processed data is marked available in the GEO index.

Sample decision clarity

15/15 pts

All samples are assigned to a case or control group.

Blocking warnings

7/10 pts

Warnings are present, but none are critical blockers.

Metadata normalization

10/10 pts

Metadata quality is high enough to support downstream handoff.

Blockers

No readiness blockers detected.

Next Steps

Verify the proposed sample assignments and case-versus-control comparison against the GEO metadata before using them in DESeq2 or another differential-expression tool.
Confirm processed count files and sample identifiers match the exported metadata.

Analysis Preparation Checklist

5/6 ready

Group labels reviewed

Needs review

Siftome proposed case and control labels, but no reviewer confirmation is stored yet.

Open the sample grouping CSV and confirm group labels before analysis.

Minimum sample count met

Ready

Both groups meet the minimum of 2 samples.

Confirm whether the cohort is large enough for the intended statistical analysis.

Processed counts available

Ready

Processed data availability is marked true in the GEO index.

Verify that downloaded processed files contain usable count or expression identifiers.

Ambiguous samples handled

Ready

No review-needed or unassigned samples are present in the proposed grouping.

Review the grouping table for biologically meaningful differences that the automated checks may not detect.

Exclusion decisions recorded

Ready

No hard-excluded samples were detected by the current rules.

Record any manual exclusions in the downstream analysis notes.

Source traceability preserved

Ready

The dataset and sample accessions can be traced back to GEO.

Keep GEO accessions with exported metadata.

Bioinformatician Review

Bioinformatician review required

Ask a bioinformatician to review grouping, count availability, exclusions, and design before DE.

Assay context may require expert handling before DESeq2-style analysis.

Why This Is Ranked Here

Tumor vs normal

Not suitable Dataset does not meet the current suitability threshold.

Applied Review Decisions

No active review decisions affect this ranking.

Derived Classifications

Assay differs from search intent Microarray Search intent expects bulk RNA-seq. Assay came from Normalization rules.
Disease context Crohn's disease, inflammatory bowel disease Disease context came from Normalization rules.
Likely case group Crohn's disease 48 samples
Likely control group Healthy control 12 samples

Intent Interpretation

Downgrade or exclusion reason Downgraded assay: microarray cohorts are separated from the RNA-seq intent. Derived from current-intent ranking reasons.

Ranking Facts

Supporting evidence

Comparison: Disease/model vs control. Specimen: Tissue. Comparison suitability: 0%.
Interpreted disease metadata: Crohn's disease, Inflammatory bowel disease.
Processed data is available for downstream review.
External evidence: PubMed links 10 publications; 10 DOIs available: PMID 35795659, PMID 36248794, PMID 36714107, PMID 36792688, PMID 37169818.
Publication context: Neutrophil Infiltration Characterized by Upregulation of S100A8, S100A9, S100A12 and CXCR2 Is Associated With the Co-Occurrence of Crohn's Disease and Peripheral Artery Disease.. Frontiers in immunology, 2022. PMID 35795659. DOI 10.3389/fimmu.2022.896645.
Publication context: Identification and validation of the common pathogenesis and hub biomarkers in Hirschsprung disease complicated with Crohn's disease.. Frontiers in immunology, 2022. PMID 36248794. DOI 10.3389/fimmu.2022.961217.
Publication context: Analysis of ferroptosis-associated genes in Crohn's disease based on bioinformatics.. Frontiers in medicine, 2022. PMID 36714107. DOI 10.3389/fmed.2022.1058076.
Publication context: 7 additional linked PubMed publications are available.

Cautions

Downgraded assay: microarray cohorts are separated from the RNA-seq intent.
Disease/control design without a tumor/normal comparison is outside tumor/normal triage.
Microarray expression context downgraded below primary bulk RNA-seq for the default tissue ranking.
Overall score capped because comparison suitability is weak for the selected search intent.
Overall score capped because microarray cohorts should be compared separately from RNA-seq cohorts.
Comparison suitability score is below the Phase 1 recommended threshold.

Dataset Warnings

Microarray expression context was detected; compare separately from RNA-seq cohorts.
Microarray datasets are downgraded in the patient-tissue tumor-normal intent unless secondary assays are explicitly enabled.

Normalized Fields

124 fields

Field Value Source Derived by Confidence Evidence Reason

assay_type microarray GSE95095 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence microarray dataset_accession: GSE95095 dataset_title: Differential Gene Expression between involved and uninvolved sites of Crohn’s disease: Insights into a Distinctive Pathogenesis Profil... keyword match keyword match: microarray

disease Crohn's disease GSE95095 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease dataset_accession: GSE95095 dataset_title: Differential Gene Expression between involved and uninvolved sites of Crohn’s disease: Insights into a Distinctive Pathogenesis Profil... controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease inflammatory bowel disease GSE95095 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence inflammatory bowel disease dataset_accession: GSE95095 dataset_title: Differential Gene Expression between involved and uninvolved sites of Crohn’s disease: Insights into a Distinctive Pathogenesis Profil... controlled vocabulary controlled vocabulary disease match: inflammatory bowel disease

disease Crohn's disease GSM2496058 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease CD_involved_1 Crohn’s disease involved disease state: CD; individual id: 1; site: involved; tissue: intestinal tissue controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2496059 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease CD_involved_2 Crohn’s disease involved disease state: CD; individual id: 2; site: involved; tissue: intestinal tissue controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2496060 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease CD_involved_3 Crohn’s disease involved disease state: CD; individual id: 3; site: involved; tissue: intestinal tissue controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2496061 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease CD_involved_4 Crohn’s disease involved disease state: CD; individual id: 4; site: involved; tissue: intestinal tissue controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2496062 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease CD_involved_5 Crohn’s disease involved disease state: CD; individual id: 5; site: involved; tissue: intestinal tissue controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2496063 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease CD_involved_6 Crohn’s disease involved disease state: CD; individual id: 6; site: involved; tissue: intestinal tissue controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2496064 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease CD_involved_7 Crohn’s disease involved disease state: CD; individual id: 7; site: involved; tissue: intestinal tissue controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2496065 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease CD_involved_8 Crohn’s disease involved disease state: CD; individual id: 8; site: involved; tissue: intestinal tissue controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2496066 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease CD_involved_9 Crohn’s disease involved disease state: CD; individual id: 9; site: involved; tissue: intestinal tissue controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2496067 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease CD_involved_10 Crohn’s disease involved disease state: CD; individual id: 10; site: involved; tissue: intestinal tissue controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2496068 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease CD_involved_11 Crohn’s disease involved disease state: CD; individual id: 11; site: involved; tissue: intestinal tissue controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2496069 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease CD_involved_12 Crohn’s disease involved disease state: CD; individual id: 12; site: involved; tissue: intestinal tissue controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2496070 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease CD_involved_13 Crohn’s disease involved disease state: CD; individual id: 13; site: involved; tissue: intestinal tissue controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2496071 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease CD_involved_14 Crohn’s disease involved disease state: CD; individual id: 14; site: involved; tissue: intestinal tissue controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2496072 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease CD_involved_15 Crohn’s disease involved disease state: CD; individual id: 15; site: involved; tissue: intestinal tissue controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2496073 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease CD_involved_16 Crohn’s disease involved disease state: CD; individual id: 16; site: involved; tissue: intestinal tissue controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2496074 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease CD_involved_17 Crohn’s disease involved disease state: CD; individual id: 17; site: involved; tissue: intestinal tissue controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2496075 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease CD_involved_18 Crohn’s disease involved disease state: CD; individual id: 18; site: involved; tissue: intestinal tissue controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2496076 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease CD_involved_19 Crohn’s disease involved disease state: CD; individual id: 19; site: involved; tissue: intestinal tissue controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2496077 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease CD_involved_20 Crohn’s disease involved disease state: CD; individual id: 20; site: involved; tissue: intestinal tissue controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2496078 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease CD_involved_21 Crohn’s disease involved disease state: CD; individual id: 21; site: involved; tissue: intestinal tissue controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2496079 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease CD_involved_22 Crohn’s disease involved disease state: CD; individual id: 22; site: involved; tissue: intestinal tissue controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2496080 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease CD_involved_23 Crohn’s disease involved disease state: CD; individual id: 23; site: involved; tissue: intestinal tissue controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2496081 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease CD_involved_24 Crohn’s disease involved disease state: CD; individual id: 24; site: involved; tissue: intestinal tissue controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2496082 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease CD_uninvolved_1 Crohn’s disease uninvolved disease state: CD; individual id: 1; site: uninvolved; tissue: intestinal tissue controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2496083 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease CD_uninvolved_2 Crohn’s disease uninvolved disease state: CD; individual id: 2; site: uninvolved; tissue: intestinal tissue controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2496084 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease CD_uninvolved_3 Crohn’s disease uninvolved disease state: CD; individual id: 3; site: uninvolved; tissue: intestinal tissue controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2496085 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease CD_uninvolved_4 Crohn’s disease uninvolved disease state: CD; individual id: 4; site: uninvolved; tissue: intestinal tissue controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2496086 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease CD_uninvolved_5 Crohn’s disease uninvolved disease state: CD; individual id: 5; site: uninvolved; tissue: intestinal tissue controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2496087 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease CD_uninvolved_6 Crohn’s disease uninvolved disease state: CD; individual id: 6; site: uninvolved; tissue: intestinal tissue controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2496088 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease CD_uninvolved_7 Crohn’s disease uninvolved disease state: CD; individual id: 7; site: uninvolved; tissue: intestinal tissue controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2496089 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease CD_uninvolved_8 Crohn’s disease uninvolved disease state: CD; individual id: 8; site: uninvolved; tissue: intestinal tissue controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2496090 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease CD_uninvolved_9 Crohn’s disease uninvolved disease state: CD; individual id: 9; site: uninvolved; tissue: intestinal tissue controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2496091 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease CD_uninvolved_10 Crohn’s disease uninvolved disease state: CD; individual id: 10; site: uninvolved; tissue: intestinal tissue controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2496092 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease CD_uninvolved_11 Crohn’s disease uninvolved disease state: CD; individual id: 11; site: uninvolved; tissue: intestinal tissue controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2496093 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease CD_uninvolved_12 Crohn’s disease uninvolved disease state: CD; individual id: 12; site: uninvolved; tissue: intestinal tissue controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2496094 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease CD_uninvolved_13 Crohn’s disease uninvolved disease state: CD; individual id: 13; site: uninvolved; tissue: intestinal tissue controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2496095 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease CD_uninvolved_14 Crohn’s disease uninvolved disease state: CD; individual id: 14; site: uninvolved; tissue: intestinal tissue controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2496096 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease CD_uninvolved_15 Crohn’s disease uninvolved disease state: CD; individual id: 15; site: uninvolved; tissue: intestinal tissue controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2496097 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease CD_uninvolved_16 Crohn’s disease uninvolved disease state: CD; individual id: 16; site: uninvolved; tissue: intestinal tissue controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2496098 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease CD_uninvolved_17 Crohn’s disease uninvolved disease state: CD; individual id: 17; site: uninvolved; tissue: intestinal tissue controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2496099 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease CD_uninvolved_18 Crohn’s disease uninvolved disease state: CD; individual id: 18; site: uninvolved; tissue: intestinal tissue controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2496100 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease CD_uninvolved_19 Crohn’s disease uninvolved disease state: CD; individual id: 19; site: uninvolved; tissue: intestinal tissue controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2496101 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease CD_uninvolved_20 Crohn’s disease uninvolved disease state: CD; individual id: 20; site: uninvolved; tissue: intestinal tissue controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2496102 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease CD_uninvolved_21 Crohn’s disease uninvolved disease state: CD; individual id: 21; site: uninvolved; tissue: intestinal tissue controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2496103 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease CD_uninvolved_22 Crohn’s disease uninvolved disease state: CD; individual id: 22; site: uninvolved; tissue: intestinal tissue controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2496104 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease CD_uninvolved_23 Crohn’s disease uninvolved disease state: CD; individual id: 23; site: uninvolved; tissue: intestinal tissue controlled vocabulary controlled vocabulary disease match: Crohn's disease

disease Crohn's disease GSM2496105 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence Crohn's disease CD_uninvolved_24 Crohn’s disease uninvolved disease state: CD; individual id: 24; site: uninvolved; tissue: intestinal tissue controlled vocabulary controlled vocabulary disease match: Crohn's disease

organism Homo sapiens GSE95095 Runtime Siftome inference UNRESOLVED / UNREVIEWED high confidence homo sapiens dataset_accession: GSE95095 dataset_title: Differential Gene Expression between involved and uninvolved sites of Crohn’s disease: Insights into a Distinctive Pathogenesis Profil... keyword match keyword match: homo sapiens

sample_type normal tissue GSM2496106 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal Normal_control_1 control disease state: Normal; individual id: 1; tissue: intestinal tissue controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM2496107 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal Normal_control_2 control disease state: Normal; individual id: 2; tissue: intestinal tissue controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM2496108 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal Normal_control_3 control disease state: Normal; individual id: 3; tissue: intestinal tissue controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM2496109 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal Normal_control_4 control disease state: Normal; individual id: 4; tissue: intestinal tissue controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM2496110 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal Normal_control_5 control disease state: Normal; individual id: 5; tissue: intestinal tissue controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM2496111 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal Normal_control_6 control disease state: Normal; individual id: 6; tissue: intestinal tissue controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM2496112 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal Normal_control_7 control disease state: Normal; individual id: 7; tissue: intestinal tissue controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM2496113 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal Normal_control_8 control disease state: Normal; individual id: 8; tissue: intestinal tissue controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM2496114 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal Normal_control_9 control disease state: Normal; individual id: 9; tissue: intestinal tissue controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM2496115 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal Normal_control_10 control disease state: Normal; individual id: 10; tissue: intestinal tissue controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM2496116 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal Normal_control_11 control disease state: Normal; individual id: 11; tissue: intestinal tissue controlled vocabulary controlled vocabulary sample type match: normal

sample_type normal tissue GSM2496117 Runtime Siftome inference UNRESOLVED / UNREVIEWED low confidence normal Normal_control_12 control disease state: Normal; individual id: 12; tissue: intestinal tissue controlled vocabulary controlled vocabulary sample type match: normal

tissue intestine GSM2496058 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal CD_involved_1 Crohn’s disease involved disease state: CD; individual id: 1; site: involved; tissue: intestinal tissue controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM2496059 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal CD_involved_2 Crohn’s disease involved disease state: CD; individual id: 2; site: involved; tissue: intestinal tissue controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM2496060 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal CD_involved_3 Crohn’s disease involved disease state: CD; individual id: 3; site: involved; tissue: intestinal tissue controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM2496061 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal CD_involved_4 Crohn’s disease involved disease state: CD; individual id: 4; site: involved; tissue: intestinal tissue controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM2496062 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal CD_involved_5 Crohn’s disease involved disease state: CD; individual id: 5; site: involved; tissue: intestinal tissue controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM2496063 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal CD_involved_6 Crohn’s disease involved disease state: CD; individual id: 6; site: involved; tissue: intestinal tissue controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM2496064 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal CD_involved_7 Crohn’s disease involved disease state: CD; individual id: 7; site: involved; tissue: intestinal tissue controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM2496065 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal CD_involved_8 Crohn’s disease involved disease state: CD; individual id: 8; site: involved; tissue: intestinal tissue controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM2496066 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal CD_involved_9 Crohn’s disease involved disease state: CD; individual id: 9; site: involved; tissue: intestinal tissue controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM2496067 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal CD_involved_10 Crohn’s disease involved disease state: CD; individual id: 10; site: involved; tissue: intestinal tissue controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM2496068 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal CD_involved_11 Crohn’s disease involved disease state: CD; individual id: 11; site: involved; tissue: intestinal tissue controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM2496069 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal CD_involved_12 Crohn’s disease involved disease state: CD; individual id: 12; site: involved; tissue: intestinal tissue controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM2496070 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal CD_involved_13 Crohn’s disease involved disease state: CD; individual id: 13; site: involved; tissue: intestinal tissue controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM2496071 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal CD_involved_14 Crohn’s disease involved disease state: CD; individual id: 14; site: involved; tissue: intestinal tissue controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM2496072 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal CD_involved_15 Crohn’s disease involved disease state: CD; individual id: 15; site: involved; tissue: intestinal tissue controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM2496073 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal CD_involved_16 Crohn’s disease involved disease state: CD; individual id: 16; site: involved; tissue: intestinal tissue controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM2496074 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal CD_involved_17 Crohn’s disease involved disease state: CD; individual id: 17; site: involved; tissue: intestinal tissue controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM2496075 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal CD_involved_18 Crohn’s disease involved disease state: CD; individual id: 18; site: involved; tissue: intestinal tissue controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM2496076 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal CD_involved_19 Crohn’s disease involved disease state: CD; individual id: 19; site: involved; tissue: intestinal tissue controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM2496077 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal CD_involved_20 Crohn’s disease involved disease state: CD; individual id: 20; site: involved; tissue: intestinal tissue controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM2496078 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal CD_involved_21 Crohn’s disease involved disease state: CD; individual id: 21; site: involved; tissue: intestinal tissue controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM2496079 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal CD_involved_22 Crohn’s disease involved disease state: CD; individual id: 22; site: involved; tissue: intestinal tissue controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM2496080 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal CD_involved_23 Crohn’s disease involved disease state: CD; individual id: 23; site: involved; tissue: intestinal tissue controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM2496081 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal CD_involved_24 Crohn’s disease involved disease state: CD; individual id: 24; site: involved; tissue: intestinal tissue controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM2496082 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal CD_uninvolved_1 Crohn’s disease uninvolved disease state: CD; individual id: 1; site: uninvolved; tissue: intestinal tissue controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM2496083 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal CD_uninvolved_2 Crohn’s disease uninvolved disease state: CD; individual id: 2; site: uninvolved; tissue: intestinal tissue controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM2496084 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal CD_uninvolved_3 Crohn’s disease uninvolved disease state: CD; individual id: 3; site: uninvolved; tissue: intestinal tissue controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM2496085 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal CD_uninvolved_4 Crohn’s disease uninvolved disease state: CD; individual id: 4; site: uninvolved; tissue: intestinal tissue controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM2496086 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal CD_uninvolved_5 Crohn’s disease uninvolved disease state: CD; individual id: 5; site: uninvolved; tissue: intestinal tissue controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM2496087 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal CD_uninvolved_6 Crohn’s disease uninvolved disease state: CD; individual id: 6; site: uninvolved; tissue: intestinal tissue controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM2496088 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal CD_uninvolved_7 Crohn’s disease uninvolved disease state: CD; individual id: 7; site: uninvolved; tissue: intestinal tissue controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM2496089 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal CD_uninvolved_8 Crohn’s disease uninvolved disease state: CD; individual id: 8; site: uninvolved; tissue: intestinal tissue controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM2496090 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal CD_uninvolved_9 Crohn’s disease uninvolved disease state: CD; individual id: 9; site: uninvolved; tissue: intestinal tissue controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM2496091 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal CD_uninvolved_10 Crohn’s disease uninvolved disease state: CD; individual id: 10; site: uninvolved; tissue: intestinal tissue controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM2496092 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal CD_uninvolved_11 Crohn’s disease uninvolved disease state: CD; individual id: 11; site: uninvolved; tissue: intestinal tissue controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM2496093 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal CD_uninvolved_12 Crohn’s disease uninvolved disease state: CD; individual id: 12; site: uninvolved; tissue: intestinal tissue controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM2496094 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal CD_uninvolved_13 Crohn’s disease uninvolved disease state: CD; individual id: 13; site: uninvolved; tissue: intestinal tissue controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM2496095 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal CD_uninvolved_14 Crohn’s disease uninvolved disease state: CD; individual id: 14; site: uninvolved; tissue: intestinal tissue controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM2496096 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal CD_uninvolved_15 Crohn’s disease uninvolved disease state: CD; individual id: 15; site: uninvolved; tissue: intestinal tissue controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM2496097 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal CD_uninvolved_16 Crohn’s disease uninvolved disease state: CD; individual id: 16; site: uninvolved; tissue: intestinal tissue controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM2496098 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal CD_uninvolved_17 Crohn’s disease uninvolved disease state: CD; individual id: 17; site: uninvolved; tissue: intestinal tissue controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM2496099 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal CD_uninvolved_18 Crohn’s disease uninvolved disease state: CD; individual id: 18; site: uninvolved; tissue: intestinal tissue controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM2496100 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal CD_uninvolved_19 Crohn’s disease uninvolved disease state: CD; individual id: 19; site: uninvolved; tissue: intestinal tissue controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM2496101 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal CD_uninvolved_20 Crohn’s disease uninvolved disease state: CD; individual id: 20; site: uninvolved; tissue: intestinal tissue controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM2496102 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal CD_uninvolved_21 Crohn’s disease uninvolved disease state: CD; individual id: 21; site: uninvolved; tissue: intestinal tissue controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM2496103 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal CD_uninvolved_22 Crohn’s disease uninvolved disease state: CD; individual id: 22; site: uninvolved; tissue: intestinal tissue controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM2496104 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal CD_uninvolved_23 Crohn’s disease uninvolved disease state: CD; individual id: 23; site: uninvolved; tissue: intestinal tissue controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM2496105 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal CD_uninvolved_24 Crohn’s disease uninvolved disease state: CD; individual id: 24; site: uninvolved; tissue: intestinal tissue controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM2496106 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal Normal_control_1 control disease state: Normal; individual id: 1; tissue: intestinal tissue controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM2496107 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal Normal_control_2 control disease state: Normal; individual id: 2; tissue: intestinal tissue controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM2496108 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal Normal_control_3 control disease state: Normal; individual id: 3; tissue: intestinal tissue controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM2496109 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal Normal_control_4 control disease state: Normal; individual id: 4; tissue: intestinal tissue controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM2496110 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal Normal_control_5 control disease state: Normal; individual id: 5; tissue: intestinal tissue controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM2496111 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal Normal_control_6 control disease state: Normal; individual id: 6; tissue: intestinal tissue controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM2496112 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal Normal_control_7 control disease state: Normal; individual id: 7; tissue: intestinal tissue controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM2496113 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal Normal_control_8 control disease state: Normal; individual id: 8; tissue: intestinal tissue controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM2496114 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal Normal_control_9 control disease state: Normal; individual id: 9; tissue: intestinal tissue controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM2496115 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal Normal_control_10 control disease state: Normal; individual id: 10; tissue: intestinal tissue controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM2496116 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal Normal_control_11 control disease state: Normal; individual id: 11; tissue: intestinal tissue controlled vocabulary controlled vocabulary tissue match: intestinal

tissue intestine GSM2496117 Runtime Siftome inference UNRESOLVED / UNREVIEWED medium confidence intestinal Normal_control_12 control disease state: Normal; individual id: 12; tissue: intestinal tissue controlled vocabulary controlled vocabulary tissue match: intestinal

Sample Group Preview

60 rows shown Show Hide

Study totals: Case 48 | Control 12 | Unassigned 0 | Excluded 0 | Ambiguous 0 60 rows shown

Group	Role	Accession	Title	Source / characteristics	Reason
Crohn's disease	Case	GSM2496058	CD_involved_1	Crohn’s disease involved Disease state: CD; Individual id: 1; Site: Involved; Tissue: Intestinal tissue	Case marker detected.
Crohn's disease	Case	GSM2496059	CD_involved_2	Crohn’s disease involved Disease state: CD; Individual id: 2; Site: Involved; Tissue: Intestinal tissue	Case marker detected.
Crohn's disease	Case	GSM2496060	CD_involved_3	Crohn’s disease involved Disease state: CD; Individual id: 3; Site: Involved; Tissue: Intestinal tissue	Case marker detected.
Crohn's disease	Case	GSM2496061	CD_involved_4	Crohn’s disease involved Disease state: CD; Individual id: 4; Site: Involved; Tissue: Intestinal tissue	Case marker detected.
Crohn's disease	Case	GSM2496062	CD_involved_5	Crohn’s disease involved Disease state: CD; Individual id: 5; Site: Involved; Tissue: Intestinal tissue	Case marker detected.
Crohn's disease	Case	GSM2496063	CD_involved_6	Crohn’s disease involved Disease state: CD; Individual id: 6; Site: Involved; Tissue: Intestinal tissue	Case marker detected.
Crohn's disease	Case	GSM2496064	CD_involved_7	Crohn’s disease involved Disease state: CD; Individual id: 7; Site: Involved; Tissue: Intestinal tissue	Case marker detected.
Crohn's disease	Case	GSM2496065	CD_involved_8	Crohn’s disease involved Disease state: CD; Individual id: 8; Site: Involved; Tissue: Intestinal tissue	Case marker detected.
Crohn's disease	Case	GSM2496066	CD_involved_9	Crohn’s disease involved Disease state: CD; Individual id: 9; Site: Involved; Tissue: Intestinal tissue	Case marker detected.
Crohn's disease	Case	GSM2496067	CD_involved_10	Crohn’s disease involved Disease state: CD; Individual id: 10; Site: Involved; Tissue: Intestinal tissue	Case marker detected.
Crohn's disease	Case	GSM2496068	CD_involved_11	Crohn’s disease involved Disease state: CD; Individual id: 11; Site: Involved; Tissue: Intestinal tissue	Case marker detected.
Crohn's disease	Case	GSM2496069	CD_involved_12	Crohn’s disease involved Disease state: CD; Individual id: 12; Site: Involved; Tissue: Intestinal tissue	Case marker detected.
Crohn's disease	Case	GSM2496070	CD_involved_13	Crohn’s disease involved Disease state: CD; Individual id: 13; Site: Involved; Tissue: Intestinal tissue	Case marker detected.
Crohn's disease	Case	GSM2496071	CD_involved_14	Crohn’s disease involved Disease state: CD; Individual id: 14; Site: Involved; Tissue: Intestinal tissue	Case marker detected.
Crohn's disease	Case	GSM2496072	CD_involved_15	Crohn’s disease involved Disease state: CD; Individual id: 15; Site: Involved; Tissue: Intestinal tissue	Case marker detected.
Crohn's disease	Case	GSM2496073	CD_involved_16	Crohn’s disease involved Disease state: CD; Individual id: 16; Site: Involved; Tissue: Intestinal tissue	Case marker detected.
Crohn's disease	Case	GSM2496074	CD_involved_17	Crohn’s disease involved Disease state: CD; Individual id: 17; Site: Involved; Tissue: Intestinal tissue	Case marker detected.
Crohn's disease	Case	GSM2496075	CD_involved_18	Crohn’s disease involved Disease state: CD; Individual id: 18; Site: Involved; Tissue: Intestinal tissue	Case marker detected.
Crohn's disease	Case	GSM2496076	CD_involved_19	Crohn’s disease involved Disease state: CD; Individual id: 19; Site: Involved; Tissue: Intestinal tissue	Case marker detected.
Crohn's disease	Case	GSM2496077	CD_involved_20	Crohn’s disease involved Disease state: CD; Individual id: 20; Site: Involved; Tissue: Intestinal tissue	Case marker detected.
Crohn's disease	Case	GSM2496078	CD_involved_21	Crohn’s disease involved Disease state: CD; Individual id: 21; Site: Involved; Tissue: Intestinal tissue	Case marker detected.
Crohn's disease	Case	GSM2496079	CD_involved_22	Crohn’s disease involved Disease state: CD; Individual id: 22; Site: Involved; Tissue: Intestinal tissue	Case marker detected.
Crohn's disease	Case	GSM2496080	CD_involved_23	Crohn’s disease involved Disease state: CD; Individual id: 23; Site: Involved; Tissue: Intestinal tissue	Case marker detected.
Crohn's disease	Case	GSM2496081	CD_involved_24	Crohn’s disease involved Disease state: CD; Individual id: 24; Site: Involved; Tissue: Intestinal tissue	Case marker detected.
Crohn's disease	Case	GSM2496082	CD_uninvolved_1	Crohn’s disease uninvolved Disease state: CD; Individual id: 1; Site: Uninvolved; Tissue: Intestinal tissue	Case marker detected.
Crohn's disease	Case	GSM2496083	CD_uninvolved_2	Crohn’s disease uninvolved Disease state: CD; Individual id: 2; Site: Uninvolved; Tissue: Intestinal tissue	Case marker detected.
Crohn's disease	Case	GSM2496084	CD_uninvolved_3	Crohn’s disease uninvolved Disease state: CD; Individual id: 3; Site: Uninvolved; Tissue: Intestinal tissue	Case marker detected.
Crohn's disease	Case	GSM2496085	CD_uninvolved_4	Crohn’s disease uninvolved Disease state: CD; Individual id: 4; Site: Uninvolved; Tissue: Intestinal tissue	Case marker detected.
Crohn's disease	Case	GSM2496086	CD_uninvolved_5	Crohn’s disease uninvolved Disease state: CD; Individual id: 5; Site: Uninvolved; Tissue: Intestinal tissue	Case marker detected.
Crohn's disease	Case	GSM2496087	CD_uninvolved_6	Crohn’s disease uninvolved Disease state: CD; Individual id: 6; Site: Uninvolved; Tissue: Intestinal tissue	Case marker detected.
Crohn's disease	Case	GSM2496088	CD_uninvolved_7	Crohn’s disease uninvolved Disease state: CD; Individual id: 7; Site: Uninvolved; Tissue: Intestinal tissue	Case marker detected.
Crohn's disease	Case	GSM2496089	CD_uninvolved_8	Crohn’s disease uninvolved Disease state: CD; Individual id: 8; Site: Uninvolved; Tissue: Intestinal tissue	Case marker detected.
Crohn's disease	Case	GSM2496090	CD_uninvolved_9	Crohn’s disease uninvolved Disease state: CD; Individual id: 9; Site: Uninvolved; Tissue: Intestinal tissue	Case marker detected.
Crohn's disease	Case	GSM2496091	CD_uninvolved_10	Crohn’s disease uninvolved Disease state: CD; Individual id: 10; Site: Uninvolved; Tissue: Intestinal tissue	Case marker detected.
Crohn's disease	Case	GSM2496092	CD_uninvolved_11	Crohn’s disease uninvolved Disease state: CD; Individual id: 11; Site: Uninvolved; Tissue: Intestinal tissue	Case marker detected.
Crohn's disease	Case	GSM2496093	CD_uninvolved_12	Crohn’s disease uninvolved Disease state: CD; Individual id: 12; Site: Uninvolved; Tissue: Intestinal tissue	Case marker detected.
Crohn's disease	Case	GSM2496094	CD_uninvolved_13	Crohn’s disease uninvolved Disease state: CD; Individual id: 13; Site: Uninvolved; Tissue: Intestinal tissue	Case marker detected.
Crohn's disease	Case	GSM2496095	CD_uninvolved_14	Crohn’s disease uninvolved Disease state: CD; Individual id: 14; Site: Uninvolved; Tissue: Intestinal tissue	Case marker detected.
Crohn's disease	Case	GSM2496096	CD_uninvolved_15	Crohn’s disease uninvolved Disease state: CD; Individual id: 15; Site: Uninvolved; Tissue: Intestinal tissue	Case marker detected.
Crohn's disease	Case	GSM2496097	CD_uninvolved_16	Crohn’s disease uninvolved Disease state: CD; Individual id: 16; Site: Uninvolved; Tissue: Intestinal tissue	Case marker detected.
Crohn's disease	Case	GSM2496098	CD_uninvolved_17	Crohn’s disease uninvolved Disease state: CD; Individual id: 17; Site: Uninvolved; Tissue: Intestinal tissue	Case marker detected.
Crohn's disease	Case	GSM2496099	CD_uninvolved_18	Crohn’s disease uninvolved Disease state: CD; Individual id: 18; Site: Uninvolved; Tissue: Intestinal tissue	Case marker detected.
Crohn's disease	Case	GSM2496100	CD_uninvolved_19	Crohn’s disease uninvolved Disease state: CD; Individual id: 19; Site: Uninvolved; Tissue: Intestinal tissue	Case marker detected.
Crohn's disease	Case	GSM2496101	CD_uninvolved_20	Crohn’s disease uninvolved Disease state: CD; Individual id: 20; Site: Uninvolved; Tissue: Intestinal tissue	Case marker detected.
Crohn's disease	Case	GSM2496102	CD_uninvolved_21	Crohn’s disease uninvolved Disease state: CD; Individual id: 21; Site: Uninvolved; Tissue: Intestinal tissue	Case marker detected.
Crohn's disease	Case	GSM2496103	CD_uninvolved_22	Crohn’s disease uninvolved Disease state: CD; Individual id: 22; Site: Uninvolved; Tissue: Intestinal tissue	Case marker detected.
Crohn's disease	Case	GSM2496104	CD_uninvolved_23	Crohn’s disease uninvolved Disease state: CD; Individual id: 23; Site: Uninvolved; Tissue: Intestinal tissue	Case marker detected.
Crohn's disease	Case	GSM2496105	CD_uninvolved_24	Crohn’s disease uninvolved Disease state: CD; Individual id: 24; Site: Uninvolved; Tissue: Intestinal tissue	Case marker detected.
Healthy control	Control	GSM2496106	Normal_control_1	Control Disease state: Normal; Individual id: 1; Tissue: Intestinal tissue	Sample-local control marker detected.
Healthy control	Control	GSM2496107	Normal_control_2	Control Disease state: Normal; Individual id: 2; Tissue: Intestinal tissue	Sample-local control marker detected.
Healthy control	Control	GSM2496108	Normal_control_3	Control Disease state: Normal; Individual id: 3; Tissue: Intestinal tissue	Sample-local control marker detected.
Healthy control	Control	GSM2496109	Normal_control_4	Control Disease state: Normal; Individual id: 4; Tissue: Intestinal tissue	Sample-local control marker detected.
Healthy control	Control	GSM2496110	Normal_control_5	Control Disease state: Normal; Individual id: 5; Tissue: Intestinal tissue	Sample-local control marker detected.
Healthy control	Control	GSM2496111	Normal_control_6	Control Disease state: Normal; Individual id: 6; Tissue: Intestinal tissue	Sample-local control marker detected.
Healthy control	Control	GSM2496112	Normal_control_7	Control Disease state: Normal; Individual id: 7; Tissue: Intestinal tissue	Sample-local control marker detected.
Healthy control	Control	GSM2496113	Normal_control_8	Control Disease state: Normal; Individual id: 8; Tissue: Intestinal tissue	Sample-local control marker detected.
Healthy control	Control	GSM2496114	Normal_control_9	Control Disease state: Normal; Individual id: 9; Tissue: Intestinal tissue	Sample-local control marker detected.
Healthy control	Control	GSM2496115	Normal_control_10	Control Disease state: Normal; Individual id: 10; Tissue: Intestinal tissue	Sample-local control marker detected.
Healthy control	Control	GSM2496116	Normal_control_11	Control Disease state: Normal; Individual id: 11; Tissue: Intestinal tissue	Sample-local control marker detected.
Healthy control	Control	GSM2496117	Normal_control_12	Control Disease state: Normal; Individual id: 12; Tissue: Intestinal tissue	Sample-local control marker detected.

Use as Discovery Cohort

External Validation Finder

Carry Siftome's disease, organism, specimen, assay, data type, and accession into a validation project. Uncertain fields remain Unknown.

Summary

Overall design

Source Evidence

Related publications

Metadata Quality Components

Analysis Readiness

Blockers

Next Steps

Analysis Preparation Checklist

Bioinformatician Review

Why This Is Ranked Here

Applied Review Decisions

Derived Classifications

Intent Interpretation

Ranking Facts

Supporting evidence

Cautions

Dataset Warnings

Normalized Fields

Sample Group Preview

Use as Discovery Cohort