GSE96665 matching samples

GSM2537668

Uncertain

10I-CD-Active-Ileum-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 10I-CD-Active-Ileum-1 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Active; intestinal region: Ileum
- 10I-CD-Active-Ileum-1 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Active; intestinal region: Ileum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 10I-CD-Active-Ileum-1 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Active; intestinal region: Ileum
- 10I-CD-Active-Ileum-1 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Active; intestinal region: Ileum

Source metadata

Source name: Intestinal mucosa pinch biopsy
Characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Active; intestinal region: Ileum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM2537668
sample_title: 10I-CD-Active-Ileum-1
source_name: Intestinal mucosa pinch biopsy
characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Active; intestinal region: Ileum

GSM2537669

Uncertain

10N-CD-Normal-Sigmoid-1

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 10N-CD-Normal-Sigmoid-1 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Normal; intestinal region: Sigmoid
- 10N-CD-Normal-Sigmoid-1 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Normal; intestinal region: Sigmoid
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 10N-CD-Normal-Sigmoid-1 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Normal; intestinal region: Sigmoid
- 10N-CD-Normal-Sigmoid-1 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Normal; intestinal region: Sigmoid

Source metadata

Source name: Intestinal mucosa pinch biopsy
Characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Normal; intestinal region: Sigmoid
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM2537669
sample_title: 10N-CD-Normal-Sigmoid-1
source_name: Intestinal mucosa pinch biopsy
characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Normal; intestinal region: Sigmoid

GSM2537670

Uncertain

11I-CD-Active-Sigmoid-2

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 11I-CD-Active-Sigmoid-2 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Active; intestinal region: Sigmoid
- 11I-CD-Active-Sigmoid-2 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Active; intestinal region: Sigmoid
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 11I-CD-Active-Sigmoid-2 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Active; intestinal region: Sigmoid
- 11I-CD-Active-Sigmoid-2 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Active; intestinal region: Sigmoid

Source metadata

Source name: Intestinal mucosa pinch biopsy
Characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Active; intestinal region: Sigmoid
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM2537670
sample_title: 11I-CD-Active-Sigmoid-2
source_name: Intestinal mucosa pinch biopsy
characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Active; intestinal region: Sigmoid

GSM2537671

Uncertain

12I-UC-Normal-Sigmoid-3

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 12I-UC-Normal-Sigmoid-3 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Normal; intestinal region: Sigmoid
- 12I-UC-Normal-Sigmoid-3 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Normal; intestinal region: Sigmoid
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 12I-UC-Normal-Sigmoid-3 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Normal; intestinal region: Sigmoid
- 12I-UC-Normal-Sigmoid-3 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Normal; intestinal region: Sigmoid

Source metadata

Source name: Intestinal mucosa pinch biopsy
Characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Normal; intestinal region: Sigmoid
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM2537671
sample_title: 12I-UC-Normal-Sigmoid-3
source_name: Intestinal mucosa pinch biopsy
characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Normal; intestinal region: Sigmoid

GSM2537672

Uncertain

12N-UC-Normal-Cecum-3

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 12N-UC-Normal-Cecum-3 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Normal; intestinal region: Cecum
- 12N-UC-Normal-Cecum-3 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Normal; intestinal region: Cecum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 12N-UC-Normal-Cecum-3 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Normal; intestinal region: Cecum
- 12N-UC-Normal-Cecum-3 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Normal; intestinal region: Cecum

Source metadata

Source name: Intestinal mucosa pinch biopsy
Characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Normal; intestinal region: Cecum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM2537672
sample_title: 12N-UC-Normal-Cecum-3
source_name: Intestinal mucosa pinch biopsy
characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Normal; intestinal region: Cecum

GSM2537673

Uncertain

13N-UC-Normal-Transverse-4

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 13N-UC-Normal-Transverse-4 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Normal; intestinal region: Transverse
- 13N-UC-Normal-Transverse-4 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Normal; intestinal region: Transverse
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 13N-UC-Normal-Transverse-4 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Normal; intestinal region: Transverse
- 13N-UC-Normal-Transverse-4 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Normal; intestinal region: Transverse

Source metadata

Source name: Intestinal mucosa pinch biopsy
Characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Normal; intestinal region: Transverse
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM2537673
sample_title: 13N-UC-Normal-Transverse-4
source_name: Intestinal mucosa pinch biopsy
characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Normal; intestinal region: Transverse

GSM2537674

Uncertain

14I-CD-Active-Ileum-5

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 14I-CD-Active-Ileum-5 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Active; intestinal region: Ileum
- 14I-CD-Active-Ileum-5 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Active; intestinal region: Ileum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 14I-CD-Active-Ileum-5 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Active; intestinal region: Ileum
- 14I-CD-Active-Ileum-5 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Active; intestinal region: Ileum

Source metadata

Source name: Intestinal mucosa pinch biopsy
Characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Active; intestinal region: Ileum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM2537674
sample_title: 14I-CD-Active-Ileum-5
source_name: Intestinal mucosa pinch biopsy
characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Active; intestinal region: Ileum

GSM2537675

Uncertain

14N-CD-Normal-Ileum-5

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 14N-CD-Normal-Ileum-5 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Normal; intestinal region: Ileum
- 14N-CD-Normal-Ileum-5 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Normal; intestinal region: Ileum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 14N-CD-Normal-Ileum-5 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Normal; intestinal region: Ileum
- 14N-CD-Normal-Ileum-5 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Normal; intestinal region: Ileum

Source metadata

Source name: Intestinal mucosa pinch biopsy
Characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Normal; intestinal region: Ileum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM2537675
sample_title: 14N-CD-Normal-Ileum-5
source_name: Intestinal mucosa pinch biopsy
characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Normal; intestinal region: Ileum

GSM2537676

Uncertain

15N-UC-Inactive-Transverse-6

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 15N-UC-Inactive-Transverse-6 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Inactive; intestinal region: Transverse
- 15N-UC-Inactive-Transverse-6 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Inactive; intestinal region: Transverse
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 15N-UC-Inactive-Transverse-6 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Inactive; intestinal region: Transverse
- 15N-UC-Inactive-Transverse-6 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Inactive; intestinal region: Transverse

Source metadata

Source name: Intestinal mucosa pinch biopsy
Characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Inactive; intestinal region: Transverse
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM2537676
sample_title: 15N-UC-Inactive-Transverse-6
source_name: Intestinal mucosa pinch biopsy
characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Inactive; intestinal region: Transverse

GSM2537677

Uncertain

17N-CD-Normal-Descending-7

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 17N-CD-Normal-Descending-7 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Normal; intestinal region: Descending
- 17N-CD-Normal-Descending-7 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Normal; intestinal region: Descending
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 17N-CD-Normal-Descending-7 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Normal; intestinal region: Descending
- 17N-CD-Normal-Descending-7 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Normal; intestinal region: Descending

Source metadata

Source name: Intestinal mucosa pinch biopsy
Characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Normal; intestinal region: Descending
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM2537677
sample_title: 17N-CD-Normal-Descending-7
source_name: Intestinal mucosa pinch biopsy
characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Normal; intestinal region: Descending

GSM2537678

Uncertain

18N-CD-Inactive-Sigmoid-8

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 18N-CD-Inactive-Sigmoid-8 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Inactive; intestinal region: Sigmoid
- 18N-CD-Inactive-Sigmoid-8 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Inactive; intestinal region: Sigmoid
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 18N-CD-Inactive-Sigmoid-8 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Inactive; intestinal region: Sigmoid
- 18N-CD-Inactive-Sigmoid-8 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Inactive; intestinal region: Sigmoid

Source metadata

Source name: Intestinal mucosa pinch biopsy
Characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Inactive; intestinal region: Sigmoid
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM2537678
sample_title: 18N-CD-Inactive-Sigmoid-8
source_name: Intestinal mucosa pinch biopsy
characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Inactive; intestinal region: Sigmoid

GSM2537679

Uncertain

19N-UC-Normal-Transverse-9

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 19N-UC-Normal-Transverse-9 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Normal; intestinal region: Transverse
- 19N-UC-Normal-Transverse-9 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Normal; intestinal region: Transverse
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 19N-UC-Normal-Transverse-9 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Normal; intestinal region: Transverse
- 19N-UC-Normal-Transverse-9 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Normal; intestinal region: Transverse

Source metadata

Source name: Intestinal mucosa pinch biopsy
Characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Normal; intestinal region: Transverse
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM2537679
sample_title: 19N-UC-Normal-Transverse-9
source_name: Intestinal mucosa pinch biopsy
characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Normal; intestinal region: Transverse

GSM2537680

Uncertain

1I-UC-Inactive-Sigmoid-10

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 1I-UC-Inactive-Sigmoid-10 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Inactive; intestinal region: Sigmoid
- 1I-UC-Inactive-Sigmoid-10 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Inactive; intestinal region: Sigmoid
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 1I-UC-Inactive-Sigmoid-10 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Inactive; intestinal region: Sigmoid
- 1I-UC-Inactive-Sigmoid-10 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Inactive; intestinal region: Sigmoid

Source metadata

Source name: Intestinal mucosa pinch biopsy
Characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Inactive; intestinal region: Sigmoid
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM2537680
sample_title: 1I-UC-Inactive-Sigmoid-10
source_name: Intestinal mucosa pinch biopsy
characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Inactive; intestinal region: Sigmoid

GSM2537681

Uncertain

1N-UC-Normal-Cecum-10

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 1N-UC-Normal-Cecum-10 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Normal; intestinal region: Cecum
- 1N-UC-Normal-Cecum-10 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Normal; intestinal region: Cecum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 1N-UC-Normal-Cecum-10 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Normal; intestinal region: Cecum
- 1N-UC-Normal-Cecum-10 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Normal; intestinal region: Cecum

Source metadata

Source name: Intestinal mucosa pinch biopsy
Characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Normal; intestinal region: Cecum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM2537681
sample_title: 1N-UC-Normal-Cecum-10
source_name: Intestinal mucosa pinch biopsy
characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Normal; intestinal region: Cecum

GSM2537682

Uncertain

20N-UC-Inactive-Sigmoid-11

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 20N-UC-Inactive-Sigmoid-11 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Inactive; intestinal region: Sigmoid
- 20N-UC-Inactive-Sigmoid-11 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Inactive; intestinal region: Sigmoid
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 20N-UC-Inactive-Sigmoid-11 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Inactive; intestinal region: Sigmoid
- 20N-UC-Inactive-Sigmoid-11 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Inactive; intestinal region: Sigmoid

Source metadata

Source name: Intestinal mucosa pinch biopsy
Characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Inactive; intestinal region: Sigmoid
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM2537682
sample_title: 20N-UC-Inactive-Sigmoid-11
source_name: Intestinal mucosa pinch biopsy
characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Inactive; intestinal region: Sigmoid

GSM2537683

Uncertain

21I-UC-Active-Transverse-12

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 21I-UC-Active-Transverse-12 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Active; intestinal region: Transverse
- 21I-UC-Active-Transverse-12 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Active; intestinal region: Transverse
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 21I-UC-Active-Transverse-12 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Active; intestinal region: Transverse
- 21I-UC-Active-Transverse-12 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Active; intestinal region: Transverse

Source metadata

Source name: Intestinal mucosa pinch biopsy
Characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Active; intestinal region: Transverse
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM2537683
sample_title: 21I-UC-Active-Transverse-12
source_name: Intestinal mucosa pinch biopsy
characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Active; intestinal region: Transverse

GSM2537684

Uncertain

22Na-CD-Normal-Sigmoid-13

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 22Na-CD-Normal-Sigmoid-13 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Normal; intestinal region: Sigmoid
- 22Na-CD-Normal-Sigmoid-13 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Normal; intestinal region: Sigmoid
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 22Na-CD-Normal-Sigmoid-13 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Normal; intestinal region: Sigmoid
- 22Na-CD-Normal-Sigmoid-13 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Normal; intestinal region: Sigmoid

Source metadata

Source name: Intestinal mucosa pinch biopsy
Characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Normal; intestinal region: Sigmoid
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM2537684
sample_title: 22Na-CD-Normal-Sigmoid-13
source_name: Intestinal mucosa pinch biopsy
characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Normal; intestinal region: Sigmoid

GSM2537685

Uncertain

22Nb-CD-Normal-Ascending-13

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 22Nb-CD-Normal-Ascending-13 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Normal; intestinal region: Ascending
- 22Nb-CD-Normal-Ascending-13 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Normal; intestinal region: Ascending
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 22Nb-CD-Normal-Ascending-13 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Normal; intestinal region: Ascending
- 22Nb-CD-Normal-Ascending-13 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Normal; intestinal region: Ascending

Source metadata

Source name: Intestinal mucosa pinch biopsy
Characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Normal; intestinal region: Ascending
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM2537685
sample_title: 22Nb-CD-Normal-Ascending-13
source_name: Intestinal mucosa pinch biopsy
characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Normal; intestinal region: Ascending

GSM2537686

Uncertain

23Na-CD-Normal-Ascending-14

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 23Na-CD-Normal-Ascending-14 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Normal; intestinal region: Ascending
- 23Na-CD-Normal-Ascending-14 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Normal; intestinal region: Ascending
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 23Na-CD-Normal-Ascending-14 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Normal; intestinal region: Ascending
- 23Na-CD-Normal-Ascending-14 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Normal; intestinal region: Ascending

Source metadata

Source name: Intestinal mucosa pinch biopsy
Characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Normal; intestinal region: Ascending
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM2537686
sample_title: 23Na-CD-Normal-Ascending-14
source_name: Intestinal mucosa pinch biopsy
characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Normal; intestinal region: Ascending

GSM2537687

Uncertain

23Nb-CD-Normal-Descending-14

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 23Nb-CD-Normal-Descending-14 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Normal; intestinal region: Descending
- 23Nb-CD-Normal-Descending-14 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Normal; intestinal region: Descending
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 23Nb-CD-Normal-Descending-14 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Normal; intestinal region: Descending
- 23Nb-CD-Normal-Descending-14 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Normal; intestinal region: Descending

Source metadata

Source name: Intestinal mucosa pinch biopsy
Characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Normal; intestinal region: Descending
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM2537687
sample_title: 23Nb-CD-Normal-Descending-14
source_name: Intestinal mucosa pinch biopsy
characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Normal; intestinal region: Descending

GSM2537688

Uncertain

24I-UC-Inactive-Ascending-15

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 24I-UC-Inactive-Ascending-15 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Inactive; intestinal region: Ascending
- 24I-UC-Inactive-Ascending-15 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Inactive; intestinal region: Ascending
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 24I-UC-Inactive-Ascending-15 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Inactive; intestinal region: Ascending
- 24I-UC-Inactive-Ascending-15 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Inactive; intestinal region: Ascending

Source metadata

Source name: Intestinal mucosa pinch biopsy
Characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Inactive; intestinal region: Ascending
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM2537688
sample_title: 24I-UC-Inactive-Ascending-15
source_name: Intestinal mucosa pinch biopsy
characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Inactive; intestinal region: Ascending

GSM2537689

Uncertain

24N-UC-Active-Sigmoid-15

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 24N-UC-Active-Sigmoid-15 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Active; intestinal region: Sigmoid
- 24N-UC-Active-Sigmoid-15 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Active; intestinal region: Sigmoid
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 24N-UC-Active-Sigmoid-15 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Active; intestinal region: Sigmoid
- 24N-UC-Active-Sigmoid-15 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Active; intestinal region: Sigmoid

Source metadata

Source name: Intestinal mucosa pinch biopsy
Characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Active; intestinal region: Sigmoid
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM2537689
sample_title: 24N-UC-Active-Sigmoid-15
source_name: Intestinal mucosa pinch biopsy
characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Active; intestinal region: Sigmoid

GSM2537690

Uncertain

25N-CD-Normal-Sigmoid-16

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 25N-CD-Normal-Sigmoid-16 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Normal; intestinal region: Sigmoid
- 25N-CD-Normal-Sigmoid-16 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Normal; intestinal region: Sigmoid
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 25N-CD-Normal-Sigmoid-16 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Normal; intestinal region: Sigmoid
- 25N-CD-Normal-Sigmoid-16 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Normal; intestinal region: Sigmoid

Source metadata

Source name: Intestinal mucosa pinch biopsy
Characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Normal; intestinal region: Sigmoid
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM2537690
sample_title: 25N-CD-Normal-Sigmoid-16
source_name: Intestinal mucosa pinch biopsy
characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Normal; intestinal region: Sigmoid

GSM2537691

Uncertain

26I-UC-Inactive-Rectum-17

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 26I-UC-Inactive-Rectum-17 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Inactive; intestinal region: Rectum
- 26I-UC-Inactive-Rectum-17 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Inactive; intestinal region: Rectum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 26I-UC-Inactive-Rectum-17 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Inactive; intestinal region: Rectum
- 26I-UC-Inactive-Rectum-17 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Inactive; intestinal region: Rectum

Source metadata

Source name: Intestinal mucosa pinch biopsy
Characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Inactive; intestinal region: Rectum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM2537691
sample_title: 26I-UC-Inactive-Rectum-17
source_name: Intestinal mucosa pinch biopsy
characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Inactive; intestinal region: Rectum

GSM2537692

Uncertain

26N-UC-Inactive-Transverse-17

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 26N-UC-Inactive-Transverse-17 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Inactive; intestinal region: Transverse
- 26N-UC-Inactive-Transverse-17 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Inactive; intestinal region: Transverse
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 26N-UC-Inactive-Transverse-17 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Inactive; intestinal region: Transverse
- 26N-UC-Inactive-Transverse-17 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Inactive; intestinal region: Transverse

Source metadata

Source name: Intestinal mucosa pinch biopsy
Characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Inactive; intestinal region: Transverse
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM2537692
sample_title: 26N-UC-Inactive-Transverse-17
source_name: Intestinal mucosa pinch biopsy
characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Inactive; intestinal region: Transverse

GSM2537693

Uncertain

27I-UC-Active-Sigmoid-18

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 27I-UC-Active-Sigmoid-18 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Active; intestinal region: Sigmoid
- 27I-UC-Active-Sigmoid-18 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Active; intestinal region: Sigmoid
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 27I-UC-Active-Sigmoid-18 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Active; intestinal region: Sigmoid
- 27I-UC-Active-Sigmoid-18 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Active; intestinal region: Sigmoid

Source metadata

Source name: Intestinal mucosa pinch biopsy
Characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Active; intestinal region: Sigmoid
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM2537693
sample_title: 27I-UC-Active-Sigmoid-18
source_name: Intestinal mucosa pinch biopsy
characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Active; intestinal region: Sigmoid

GSM2537694

Uncertain

27N-UC-Inactive-Transverse-18

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 27N-UC-Inactive-Transverse-18 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Inactive; intestinal region: Transverse
- 27N-UC-Inactive-Transverse-18 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Inactive; intestinal region: Transverse
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 27N-UC-Inactive-Transverse-18 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Inactive; intestinal region: Transverse
- 27N-UC-Inactive-Transverse-18 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Inactive; intestinal region: Transverse

Source metadata

Source name: Intestinal mucosa pinch biopsy
Characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Inactive; intestinal region: Transverse
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM2537694
sample_title: 27N-UC-Inactive-Transverse-18
source_name: Intestinal mucosa pinch biopsy
characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Inactive; intestinal region: Transverse

GSM2537695

Uncertain

2I-UC-Normal-Rectum-19

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 2I-UC-Normal-Rectum-19 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Normal; intestinal region: Rectum
- 2I-UC-Normal-Rectum-19 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Normal; intestinal region: Rectum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 2I-UC-Normal-Rectum-19 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Normal; intestinal region: Rectum
- 2I-UC-Normal-Rectum-19 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Normal; intestinal region: Rectum

Source metadata

Source name: Intestinal mucosa pinch biopsy
Characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Normal; intestinal region: Rectum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM2537695
sample_title: 2I-UC-Normal-Rectum-19
source_name: Intestinal mucosa pinch biopsy
characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Normal; intestinal region: Rectum

GSM2537696

Uncertain

2N-UC-Normal-Cecum-19

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 2N-UC-Normal-Cecum-19 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Normal; intestinal region: Cecum
- 2N-UC-Normal-Cecum-19 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Normal; intestinal region: Cecum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 2N-UC-Normal-Cecum-19 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Normal; intestinal region: Cecum
- 2N-UC-Normal-Cecum-19 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Normal; intestinal region: Cecum

Source metadata

Source name: Intestinal mucosa pinch biopsy
Characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Normal; intestinal region: Cecum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM2537696
sample_title: 2N-UC-Normal-Cecum-19
source_name: Intestinal mucosa pinch biopsy
characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Normal; intestinal region: Cecum

GSM2537697

Uncertain

3Ia-CD-Active-Sigmoid-20

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 3Ia-CD-Active-Sigmoid-20 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Active; intestinal region: Sigmoid
- 3Ia-CD-Active-Sigmoid-20 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Active; intestinal region: Sigmoid
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 3Ia-CD-Active-Sigmoid-20 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Active; intestinal region: Sigmoid
- 3Ia-CD-Active-Sigmoid-20 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Active; intestinal region: Sigmoid

Source metadata

Source name: Intestinal mucosa pinch biopsy
Characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Active; intestinal region: Sigmoid
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM2537697
sample_title: 3Ia-CD-Active-Sigmoid-20
source_name: Intestinal mucosa pinch biopsy
characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Active; intestinal region: Sigmoid

GSM2537698

Uncertain

3Ib-CD-Active-Sigmoid-20

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 3Ib-CD-Active-Sigmoid-20 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Active; intestinal region: Sigmoid
- 3Ib-CD-Active-Sigmoid-20 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Active; intestinal region: Sigmoid
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 3Ib-CD-Active-Sigmoid-20 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Active; intestinal region: Sigmoid
- 3Ib-CD-Active-Sigmoid-20 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Active; intestinal region: Sigmoid

Source metadata

Source name: Intestinal mucosa pinch biopsy
Characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Active; intestinal region: Sigmoid
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM2537698
sample_title: 3Ib-CD-Active-Sigmoid-20
source_name: Intestinal mucosa pinch biopsy
characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Active; intestinal region: Sigmoid

GSM2537699

Uncertain

4I-CD-Active-Ileum-21

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 4I-CD-Active-Ileum-21 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Active; intestinal region: Ileum
- 4I-CD-Active-Ileum-21 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Active; intestinal region: Ileum
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 4I-CD-Active-Ileum-21 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Active; intestinal region: Ileum
- 4I-CD-Active-Ileum-21 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Active; intestinal region: Ileum

Source metadata

Source name: Intestinal mucosa pinch biopsy
Characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Active; intestinal region: Ileum
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM2537699
sample_title: 4I-CD-Active-Ileum-21
source_name: Intestinal mucosa pinch biopsy
characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Active; intestinal region: Ileum

GSM2537700

Uncertain

4N-CD-Normal-Descending-21

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 4N-CD-Normal-Descending-21 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Normal; intestinal region: Descending
- 4N-CD-Normal-Descending-21 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Normal; intestinal region: Descending
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 4N-CD-Normal-Descending-21 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Normal; intestinal region: Descending
- 4N-CD-Normal-Descending-21 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Normal; intestinal region: Descending

Source metadata

Source name: Intestinal mucosa pinch biopsy
Characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Normal; intestinal region: Descending
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM2537700
sample_title: 4N-CD-Normal-Descending-21
source_name: Intestinal mucosa pinch biopsy
characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Normal; intestinal region: Descending

GSM2537701

Uncertain

5I-CD-Active-Descending-22

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 5I-CD-Active-Descending-22 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Active; intestinal region: Descending
- 5I-CD-Active-Descending-22 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Active; intestinal region: Descending
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 5I-CD-Active-Descending-22 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Active; intestinal region: Descending
- 5I-CD-Active-Descending-22 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Active; intestinal region: Descending

Source metadata

Source name: Intestinal mucosa pinch biopsy
Characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Active; intestinal region: Descending
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM2537701
sample_title: 5I-CD-Active-Descending-22
source_name: Intestinal mucosa pinch biopsy
characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Active; intestinal region: Descending

GSM2537702

Uncertain

5N-CD-Inactive-Transverse-22

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 5N-CD-Inactive-Transverse-22 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Inactive; intestinal region: Transverse
- 5N-CD-Inactive-Transverse-22 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Inactive; intestinal region: Transverse
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 5N-CD-Inactive-Transverse-22 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Inactive; intestinal region: Transverse
- 5N-CD-Inactive-Transverse-22 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Inactive; intestinal region: Transverse

Source metadata

Source name: Intestinal mucosa pinch biopsy
Characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Inactive; intestinal region: Transverse
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM2537702
sample_title: 5N-CD-Inactive-Transverse-22
source_name: Intestinal mucosa pinch biopsy
characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Inactive; intestinal region: Transverse

GSM2537703

Uncertain

6N-CD-Normal-Transverse-23

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 6N-CD-Normal-Transverse-23 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Normal; intestinal region: Transverse
- 6N-CD-Normal-Transverse-23 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Normal; intestinal region: Transverse
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 6N-CD-Normal-Transverse-23 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Normal; intestinal region: Transverse
- 6N-CD-Normal-Transverse-23 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Normal; intestinal region: Transverse

Source metadata

Source name: Intestinal mucosa pinch biopsy
Characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Normal; intestinal region: Transverse
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM2537703
sample_title: 6N-CD-Normal-Transverse-23
source_name: Intestinal mucosa pinch biopsy
characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): CD; inflammation: Normal; intestinal region: Transverse

GSM2537704

Uncertain

7N-UC-Active-Sigmoid-24

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 7N-UC-Active-Sigmoid-24 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Active; intestinal region: Sigmoid
- 7N-UC-Active-Sigmoid-24 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Active; intestinal region: Sigmoid
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 7N-UC-Active-Sigmoid-24 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Active; intestinal region: Sigmoid
- 7N-UC-Active-Sigmoid-24 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Active; intestinal region: Sigmoid

Source metadata

Source name: Intestinal mucosa pinch biopsy
Characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Active; intestinal region: Sigmoid
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM2537704
sample_title: 7N-UC-Active-Sigmoid-24
source_name: Intestinal mucosa pinch biopsy
characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Active; intestinal region: Sigmoid

GSM2537705

Uncertain

8Ia-UC-Active-Sigmoid-25

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 8Ia-UC-Active-Sigmoid-25 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Active; intestinal region: Sigmoid
- 8Ia-UC-Active-Sigmoid-25 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Active; intestinal region: Sigmoid
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 8Ia-UC-Active-Sigmoid-25 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Active; intestinal region: Sigmoid
- 8Ia-UC-Active-Sigmoid-25 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Active; intestinal region: Sigmoid

Source metadata

Source name: Intestinal mucosa pinch biopsy
Characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Active; intestinal region: Sigmoid
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM2537705
sample_title: 8Ia-UC-Active-Sigmoid-25
source_name: Intestinal mucosa pinch biopsy
characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Active; intestinal region: Sigmoid

GSM2537706

Uncertain

8Ib-UC-Active-Ascending-25

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 8Ib-UC-Active-Ascending-25 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Active; intestinal region: Ascending
- 8Ib-UC-Active-Ascending-25 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Active; intestinal region: Ascending
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 8Ib-UC-Active-Ascending-25 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Active; intestinal region: Ascending
- 8Ib-UC-Active-Ascending-25 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Active; intestinal region: Ascending

Source metadata

Source name: Intestinal mucosa pinch biopsy
Characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Active; intestinal region: Ascending
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM2537706
sample_title: 8Ib-UC-Active-Ascending-25
source_name: Intestinal mucosa pinch biopsy
characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Active; intestinal region: Ascending

GSM2537707

Uncertain

9I-UC-Active-Ascending-26

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Case marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 9I-UC-Active-Ascending-26 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Active; intestinal region: Ascending
- 9I-UC-Active-Ascending-26 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Active; intestinal region: Ascending
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 9I-UC-Active-Ascending-26 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Active; intestinal region: Ascending
- 9I-UC-Active-Ascending-26 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Active; intestinal region: Ascending

Source metadata

Source name: Intestinal mucosa pinch biopsy
Characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Active; intestinal region: Ascending
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM2537707
sample_title: 9I-UC-Active-Ascending-26
source_name: Intestinal mucosa pinch biopsy
characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Active; intestinal region: Ascending

GSM2537708

Uncertain

9N-UC-Normal-Ascending-26

Not included: the study role or selected requirements have incomplete or conflicting evidence. organism: Homo sapiens — Insufficient evidence. assay type: bulk RNA-seq — Insufficient evidence. specimen category: Tissue or biopsy — Insufficient evidence. specimen category excludes: Biofluid — Insufficient evidence. Study role: Control marker detected.

Requirements and decision evidence

organism: Homo sapiens — Insufficient evidence
- The required value is not reported.
assay type: bulk RNA-seq — Insufficient evidence
- The required value is not reported.
specimen category: Tissue or biopsy — Insufficient evidence
- The required value is not reported.
- 9N-UC-Normal-Ascending-26 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Normal; intestinal region: Ascending
- 9N-UC-Normal-Ascending-26 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Normal; intestinal region: Ascending
excluded sample type excludes: cell line, organoid, xenograft — Meets requirement
- Supported by the indexed evidence.
specimen category excludes: Biofluid — Insufficient evidence
- The required value is not reported.
- 9N-UC-Normal-Ascending-26 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Normal; intestinal region: Ascending
- 9N-UC-Normal-Ascending-26 Intestinal mucosa pinch biopsy disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Normal; intestinal region: Ascending

Source metadata

Source name: Intestinal mucosa pinch biopsy
Characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Normal; intestinal region: Ascending
Description: Not reported
Indexed organism evidence: INFERRED · PARENT_INHERITED: Not reported
Indexed assay evidence: INFERRED · PARENT_INHERITED: Not reported
Source: GEO

Original indexed metadata

sample_accession: GSM2537708
sample_title: 9N-UC-Normal-Ascending-26
source_name: Intestinal mucosa pinch biopsy
characteristics: disease (uc = ulcerative colitis; cd = crohn's disease): UC; inflammation: Normal; intestinal region: Ascending

Included samples (0)

Uncertain samples (41)

Excluded samples (0)